Locus 4370

Sequence ID 2R_DroMel_CAF1
Location 14,365,795 – 14,365,910
Length 115
Max. P 0.605966
window6993

overview

Window 3

Location 14,365,795 – 14,365,910
Length 115
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 81.65
Mean single sequence MFE -36.91
Consensus MFE -20.09
Energy contribution -21.01
Covariance contribution 0.92
Combinations/Pair 1.35
Mean z-score -2.31
Structure conservation index 0.54
SVM decision value 0.15
SVM RNA-class probability 0.605966
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14365795 115 + 20766785
-----AAAAUGGGUGAACGCAAGGGACAGAACAAGUACUAUCCGCCCGACUAUGAUCCGAAGAAGGGCGGUCUCAACAAGUUCCAGGGAACCCACGCCCUGCGGGAACGGGCCCGCAAGA
-----.....(((((.......(((((((........))..((((((..((.........))..)))))).........))))).((....)).)))))((((((......))))))... ( -40.40)
>DroVir_CAF1 1 114 + 1
------AAAUGGGCGAACGCAAGGGUCAAAACAAAUACUAUCCGCCCGACUAUGAUCCGAAGAAGGGCGGACUCAACAAAUUCCAGGGCACUCAUGCGCUGCGUGAGCGCGCUCGCAAAA
------......((((.(((....(((.............(((((((..((.........))..)))))))...............))).(((((((...))))))).))).)))).... ( -35.99)
>DroPse_CAF1 1 112 + 1
--------AUGGGCGAGCGCAAGGGACAAAAUAAGUAUUACCCGCCCGACUAUGAUCCAAAGAAGGGCGGACUCAAUAAAUUUCAGGGCACGCAUGCCCUGCGGGAACGUGCCCGGAAGA
--------.(((((((((....)..................((((((..((.((...)).))..)))))).))).........(((((((....)))))))((....)).)))))..... ( -39.50)
>DroWil_CAF1 1 120 + 1
CAUUAAAAAUGGGAGAACGCAAGGGCCAAAACAAAUACUAUCCGCCGGACUAUGAUCCUAAGAAGGGCGGAUUGAAUAAGUUUCGCGGCACCCAUGCCUUGCGGGAACGUGCACGUAAAA
........(((((....(....).(((.((((.......((((((((((......))).......))))))).......))))...))).)))))((...(((....)))))........ ( -31.15)
>DroMoj_CAF1 1 115 + 1
-----AAAAUGGGUGAACGCAAAGGACAAAAUAAAUAUUAUCCGCCUGACUAUGAUCCAAAAAAGGGUGGACUCAAUAAAUUUCGCGGCACACAUGCGCUGCGGGAGCGUGCACGCAAAA
-----....((.(((.((((....................(((((((.................))))))).........(..((((((.(....).))))))..))))).))).))... ( -35.33)
>DroAna_CAF1 1 115 + 1
-----AAAAUGGGUGAACGUAAAGGCCAAAACAAGUACUACCCGCCGGACUAUAAUCCGAAGAAGGGUGGUCUCAACAAGUUCCAGGGCACCCAUGCCCUGAGAGAACGCGCCCGGAAGA
-----....((((((..................((.(((((((..((((......)))).....)))))))))......(((((((((((....)))))))...)))).))))))..... ( -39.10)
>consensus
_____AAAAUGGGUGAACGCAAGGGACAAAACAAAUACUAUCCGCCCGACUAUGAUCCGAAGAAGGGCGGACUCAACAAAUUCCAGGGCACCCAUGCCCUGCGGGAACGUGCCCGCAAAA
.........((((((..(((.....................((((((.................))))))..............(((((......))))))))......))))))..... (-20.09 = -21.01 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:01 2006