Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,517,756 – 2,517,856 |
Length | 100 |
Max. P | 0.999292 |
Location | 2,517,756 – 2,517,856 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 71.38 |
Mean single sequence MFE | -31.43 |
Consensus MFE | -21.30 |
Energy contribution | -22.09 |
Covariance contribution | 0.79 |
Combinations/Pair | 1.27 |
Mean z-score | -2.08 |
Structure conservation index | 0.68 |
SVM decision value | 3.49 |
SVM RNA-class probability | 0.999292 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2517756 100 + 20766785 CAGUCUGAUCAUCGCCCUCUUCGAGCUGGGCAUCUUCAUCAUGUCGUGCUGCCUGGCCAGCGCGAUGAGGAAGCGCUAGAGCCGAAGUCAGAUACAAUCC ..((((((..........(((((.(((.(((..((((.(((..((((((((......))))))))))).)))).)))..))))))))))))))....... ( -35.90) >DroVir_CAF1 27080 85 + 1 CAGCUUGAUUGUGGCGCUCUUCGAGCUGGGCAUCUUUGUGAUAGCCUGCUGCUUGGCCAACGCCAUGAGGAAGCGUUA------------AA-UUAAC-- ..((((..(..(((((....((((((.(((((((.....))).))))...))))))....)))))..)..))))....------------..-.....-- ( -32.10) >DroGri_CAF1 26824 90 + 1 UAGUUUGAUAAUUGCGCUCUUCGAGCUGACCAUCUUUGUGAUUUCUUGCUGCUUGGCCAGCGCUAUGAGGAAGCGCUA-AGCUA------AA-UUAAU-- (((((((......((((((((((.((((.(((.....(..(....)..)....))).))))....))))).)))))))-)))))------..-.....-- ( -26.30) >consensus CAGUUUGAUAAUCGCGCUCUUCGAGCUGGGCAUCUUUGUGAUAUCCUGCUGCUUGGCCAGCGCCAUGAGGAAGCGCUA_AGC________AA_UUAAU__ ..((((..((((((((((....(.((..((((.(.............).))))..)))))))))))))..)))).......................... (-21.30 = -22.09 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:33 2006