Locus 4368

Sequence ID	2R_DroMel_CAF1
Location	14,355,784 – 14,355,897
Length	113
Max. P	0.983371

overview

Window 0

Location	14,355,784 – 14,355,897
Length	113
Sequences	6
Columns	113
Reading direction	forward
Mean pairwise identity	77.10
Mean single sequence MFE	-38.78
Consensus MFE	-22.07
Energy contribution	-21.99
Covariance contribution	-0.08
Combinations/Pair	1.32
Mean z-score	-2.36
Structure conservation index	0.57
SVM decision value	1.57
SVM RNA-class probability	0.964334
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14355784 113 + 20766785
UUCAUGGAGCUGCGCACACUGAUCUGCUCCUCUGCUGCCGCAGCCGCUGCAGCUGCAGCAGCUGCAUUAUUUUGCCGCAGAAUCUCCACAUUCUGUUUGCCCUUUUCUAGGGU
....((((((((((((.........((......))....(((((.(((((....))))).))))).......)).)))))...)))))..........(((((.....))))) ( -41.40)
>DroPse_CAF1 8677 98 + 1
UUCAUGGAGCUGCGCAGACUGGUUUGCUCCUCCGCG------------GCAGCAGCCGCCGCUGCA---UUCUGUCGAAGGAUCUCCACGUUCUGCUUGCCCUUCUCCAGGGC
....(((((..(((((((((((...(.((((.((((------------(..(((((....))))).---..))).)).)))).).))).).)))))..))....))))).... ( -34.00)
>DroGri_CAF1 11974 107 + 1
UUUGUGGAGGAACGUAUACUCUGCUGCUCCUCGGCAGCGGCAA---CGGCAGCAGCUGCUGCCGCA---UUCUGACGCAGAAUCUCCACAUUCUGUUUGCUCUUCUCAAGCGU
..((((((((..........((((((((....))))))))...---(((((((....)))))))..---(((((...)))))))))))))....(((((.......))))).. ( -41.60)
>DroEre_CAF1 8813 113 + 1
UUCAUGGAGCUGCGCACACUGAUCUGCUCAUCUGCGGCCGCCGCCGCUGCGGCAGCUGCAGCUGCAUUAUUUUGCCGUAGAAUCUCCACAUUCUGCUUGCCCUUUUCUAGGGU
....((((((((((((.(.(((..(((....(((((((.(((((....))))).)))))))..)))))).).)).)))))...)))))..........(((((.....))))) ( -42.90)
>DroYak_CAF1 8728 113 + 1
UUCAUUGAGCUGCGUACACUGAUCUGCUCCUCUGCUGCCGCCGCCGCCGCAGCAGCUGCAGCUGCAUUAUUUUGCCGUAGAAUCUCCACAUUCUGCUUGCCCUUUUCUAGGGU
.......(((((((((........)))....(((((((.((....)).)))))))..))))))(((......))).(((((((......)))))))..(((((.....))))) ( -38.70)
>DroPer_CAF1 8816 98 + 1
UUCAUGGAGCUGCGCAGACUGGUUUGUUCCUCCGCG------------GCAGCAGCCGCCGCUGCA---UUCUGUCGAAGGAUCUCCACGUUCUGCUUGCCCUUCUCCAGGGC
....(((((..(((((((((((...(.((((.((((------------(..(((((....))))).---..))).)).)))).).))).).)))))..))....))))).... ( -34.10)
>consensus
UUCAUGGAGCUGCGCACACUGAUCUGCUCCUCUGCGGCCGC_G___C_GCAGCAGCUGCAGCUGCA___UUCUGCCGAAGAAUCUCCACAUUCUGCUUGCCCUUCUCUAGGGU
.....(((((...............)))))..................(((((.......)))))...........(((((((......)))))))..(((((.....))))) (-22.07 = -21.99 +  -0.08)

alignment

secondary structure

dotplot

Window 1

Location	14,355,784 – 14,355,897
Length	113
Sequences	6
Columns	113
Reading direction	reverse
Mean pairwise identity	77.10
Mean single sequence MFE	-42.27
Consensus MFE	-21.20
Energy contribution	-21.23
Covariance contribution	0.03
Combinations/Pair	1.22
Mean z-score	-2.79
Structure conservation index	0.50
SVM decision value	1.94
SVM RNA-class probability	0.983371
Prediction	RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14355784 113 - 20766785
ACCCUAGAAAAGGGCAAACAGAAUGUGGAGAUUCUGCGGCAAAAUAAUGCAGCUGCUGCAGCUGCAGCGGCUGCGGCAGCAGAGGAGCAGAUCAGUGUGCGCAGCUCCAUGAA
.((((.....))))..........((((((.((((((.((.......((((((((((((....)))))))))))))).))))))..(((.(....).)))....))))))... ( -47.91)
>DroPse_CAF1 8677 98 - 1
GCCCUGGAGAAGGGCAAGCAGAACGUGGAGAUCCUUCGACAGAA---UGCAGCGGCGGCUGCUGC------------CGCGGAGGAGCAAACCAGUCUGCGCAGCUCCAUGAA
(((((.....)))))........(((((((.(((((((.(.(..---.(((((....)))))..)------------.))))))))(((........)))....))))))).. ( -42.20)
>DroGri_CAF1 11974 107 - 1
ACGCUUGAGAAGAGCAAACAGAAUGUGGAGAUUCUGCGUCAGAA---UGCGGCAGCAGCUGCUGCCG---UUGCCGCUGCCGAGGAGCAGCAGAGUAUACGUUCCUCCACAAA
..((((.....))))........((((((((((((((.......---.((((((((.((....)).)---)))))))(((......))))))))))........))))))).. ( -42.70)
>DroEre_CAF1 8813 113 - 1
ACCCUAGAAAAGGGCAAGCAGAAUGUGGAGAUUCUACGGCAAAAUAAUGCAGCUGCAGCUGCCGCAGCGGCGGCGGCCGCAGAUGAGCAGAUCAGUGUGCGCAGCUCCAUGAA
.((((.....))))...((....(((((.....)))))))......(((.((((((.((((((((....)))))))).(((.((((.....))).).))))))))).)))... ( -43.40)
>DroYak_CAF1 8728 113 - 1
ACCCUAGAAAAGGGCAAGCAGAAUGUGGAGAUUCUACGGCAAAAUAAUGCAGCUGCAGCUGCUGCGGCGGCGGCGGCAGCAGAGGAGCAGAUCAGUGUACGCAGCUCAAUGAA
.((((.....)))).........(((((.....)))))(((......)))((((((..(((((((.((....)).)))))))..(.(((......))).)))))))....... ( -38.10)
>DroPer_CAF1 8816 98 - 1
GCCCUGGAGAAGGGCAAGCAGAACGUGGAGAUCCUUCGACAGAA---UGCAGCGGCGGCUGCUGC------------CGCGGAGGAACAAACCAGUCUGCGCAGCUCCAUGAA
(((((.....)))))........(((((((...((.((.((((.---....(((((((...))))------------)))...((......))..)))))).))))))))).. ( -39.30)
>consensus
ACCCUAGAAAAGGGCAAGCAGAAUGUGGAGAUUCUACGGCAAAA___UGCAGCUGCAGCUGCUGC_G___C_GCGGCCGCAGAGGAGCAGAUCAGUGUGCGCAGCUCCAUGAA
.((((.....)))).........(((((((.((((.(...........(((((....))))).((.((.......)).)).)))))((......))........))))))).. (-21.20 = -21.23 +   0.03)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:59 2006