Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,347,891 – 14,348,006 |
Length | 115 |
Max. P | 0.826356 |
Location | 14,347,891 – 14,348,006 |
---|---|
Length | 115 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 78.23 |
Mean single sequence MFE | -40.20 |
Consensus MFE | -31.22 |
Energy contribution | -31.50 |
Covariance contribution | 0.28 |
Combinations/Pair | 1.16 |
Mean z-score | -1.31 |
Structure conservation index | 0.78 |
SVM decision value | 0.70 |
SVM RNA-class probability | 0.826356 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14347891 115 + 20766785 CGAUCGCUGGUGUCGCGCAAUCCGCAGGGAUACCGCGGCUCCCAGUUCAUUGAUCCCAGCUACAUGUGGCUGGGUCUGGGCAAAUGACAGUGAGACCGC---CGGAGCAGCAGAAUG--G ....(((.((((((.(((.....)).).)))))))))(((((..(((((..((.((((((((....)))))))))))))))........(((....)))---.))))).........--. ( -45.10) >DroVir_CAF1 242 108 + 1 CGCUCGCUGGUAUCACGCAAUCCGAACGGAUAUCGUGGCUCCCAGUUCAUUGAUCCCAGCUACAUGUGGCUGGGCCUGGGCAAAUGACCAUAAGCUG-C---CGCAUCCACA-------- .(((((((((..(((((..((((....))))..)))))...)))))........((((((((....))))))))...))))............((..-.---.)).......-------- ( -36.70) >DroPse_CAF1 828 104 + 1 CGCUCGCUGGUGUCGCGCAAUCCGCAGGGCUAUCGCGGCUCGCAGCUCAUCGAUCCCAGCUACAUGUGGCUGGGACUGGGCAAAUAACAGUAAGCCCGU---CGAUG------------- .....(((((.((((((....((....))....)))))).).)))).(((((((((((((((....)))))))))..((((............)))).)---)))))------------- ( -46.70) >DroGri_CAF1 242 107 + 1 CGCUCGCUGGUGUCACGCAAUCCCAACGGAUAUCGCGGCUCUCAGUUCAUAGAUCCCAGCUACAUGUGGCUCGGUCUGGGCAAAUGACCAUAAGCCU-----UCCAUUCACA-------- .(((((((((.(((.((..((((....))))..)).))).).))))....(((.((.(((((....))))).)))))))))................-----..........-------- ( -28.90) >DroAna_CAF1 946 119 + 1 CGCUCCCUGGUGUCGCGCAACCCGCAGGGCUAUCGUGGCUCCCAGUUCAUCGAUCCUAGCUACAUGUGGCUGGGUCUGGGCAAAUGACAGUAAUCCCACGCACCGAACACUC-AAGGCCC .....((((((((.(((.....))).(((((.((((....(((((.........((((((((....)))))))).)))))...)))).))....)))..)))))((....))-.)))... ( -37.10) >DroPer_CAF1 828 104 + 1 CGCUCGCUGGUGUCGCGCAAUCCGCAGGGCUAUCGCGGCUCGCAGCUCAUCGAUCCCAGCUACAUGUGGCUGGGACUGGGCAAAUAACAGUAAGCCCGU---CGAUG------------- .....(((((.((((((....((....))....)))))).).)))).(((((((((((((((....)))))))))..((((............)))).)---)))))------------- ( -46.70) >consensus CGCUCGCUGGUGUCGCGCAAUCCGCAGGGAUAUCGCGGCUCCCAGUUCAUCGAUCCCAGCUACAUGUGGCUGGGUCUGGGCAAAUGACAGUAAGCCCGC___CGAAGC__CA________ .(((((((((.((((((....((....))....)))))).).))))........((((((((....))))))))...))))....................................... (-31.22 = -31.50 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:57 2006