Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,341,830 – 14,341,922 |
Length | 92 |
Max. P | 0.885577 |
Location | 14,341,830 – 14,341,922 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.24 |
Mean single sequence MFE | -12.47 |
Consensus MFE | -8.43 |
Energy contribution | -8.38 |
Covariance contribution | -0.05 |
Combinations/Pair | 1.33 |
Mean z-score | -1.62 |
Structure conservation index | 0.68 |
SVM decision value | 0.94 |
SVM RNA-class probability | 0.885577 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14341830 92 + 20766785 UUAUCGCUGCAUUAACAA-----AACAAGGCAGUGAAAU-----GGCAGUAGCAGUAGCAUUAACA-------UCAAC--CAUCAACCGCUUAAAACAUACAAAAUUUCAC ...(((((((........-----......))))))).((-----(.....(((.((..........-------.....--.....)).))).....)))............ ( -11.89) >DroSec_CAF1 7312 89 + 1 UUAUCGCUGCAUUAACAA-----AACAAGGCAGCGAAAU-----GGCAGUAGCA---GCAUUAACA-------UCAAC--CAGCAACCGCUUAAAACAUACAAAAUUUCAC ...(((((((........-----......)))))))...-----(((.((.((.---.........-------.....--..)).)).))).................... ( -14.77) >DroSim_CAF1 6174 89 + 1 UUAUCGCUGCAUUAACAA-----AACAAGGCAGCGAAAU-----GGCAGUAGCA---GCAUUAACA-------UCAAC--CAGCAACCGCUUAAAACAUACAAAAUUUCAC ...(((((((........-----......)))))))...-----(((.((.((.---.........-------.....--..)).)).))).................... ( -14.77) >DroEre_CAF1 7361 96 + 1 UUAUCGCUGCAUUUACAA-----AACAAGGCAACGAAAA-----AGCAGCAGCA---GCAUUAACAACCAUCAACAAC--CAGCAACCGCUUAAAACAUACAAAAUUUCAC .....(((((........-----.....(....).....-----.......)))---))...................--.(((....))).................... ( -10.71) >DroYak_CAF1 7480 91 + 1 UUAUCGCUGCAUUAACAAAACAAAACAAGGCAGCGAAAA-----AGCAGUAGCA---GCAUUAACAACCAUCA------------ACCGCUUAAAACAUACAAAAUUUCAC ...(((((((...................)))))))..(-----(((.((....---................------------)).))))................... ( -12.56) >DroAna_CAF1 8293 103 + 1 UUAUCGCUGCAUUAACAA-----UACGAGGCGGCAAAAAUAAAAAUUCGAAACA---AAAUACAAAAAUAAAAACAGUUACAGCUUAAGCUUAAAACAUACAAAAUUUCAC .....(((((.((.....-----...)).)))))....................---...................(((..(((....)))...))).............. ( -10.10) >consensus UUAUCGCUGCAUUAACAA_____AACAAGGCAGCGAAAA_____AGCAGUAGCA___GCAUUAACA_______UCAAC__CAGCAACCGCUUAAAACAUACAAAAUUUCAC ...(((((((...................))))))).........((....)).......................................................... ( -8.43 = -8.38 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:56 2006