Locus 4363

Sequence ID 2R_DroMel_CAF1
Location 14,334,678 – 14,334,776
Length 98
Max. P 0.572716
window6984

overview

Window 4

Location 14,334,678 – 14,334,776
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 74.53
Mean single sequence MFE -29.42
Consensus MFE -13.75
Energy contribution -14.12
Covariance contribution 0.36
Combinations/Pair 1.28
Mean z-score -1.79
Structure conservation index 0.47
SVM decision value 0.08
SVM RNA-class probability 0.572716
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14334678 98 + 20766785
UAAACACGGGCAAU--AGCGGCAUGUGCACAUAACCUCAAAUGAUUACAGAGUGCAUAGAGAUGUUGCU--U------UGUGUGUGUGUGUUUCUGCUGUUUCCCGGA
......((((.(((--(((((...(..((((((...((....)).((((((((((((....))).))))--)------))))))))))..)..)))))))).)))).. ( -35.40)
>DroVir_CAF1 562 103 + 1
AAAACACGACUUACGUAGCGGCAUGUGCACAUAACCUCAAAAAGCCUUUGUAUGC----GGCUGUGCGUGUUUGUGUGUGUGUGUGGGUGCUAGCGGUG-CUAUGGAA
....(((..((...(((.(.(((((..(((((((((.((...((((.........----)))).)).).).)))))))..))))).).))).))..)))-........ ( -30.00)
>DroSec_CAF1 188 98 + 1
UAAACACGGGCACU--AGCGGCAUGUGCACAUAACCUCAAAUGAUUACAGAGUGCAUAAAGAUGUUCCU--U------UGUGUGUGUGUGUUUCUACUGUUUCCCGGA
......((((((.(--((..(((((..(((......((....))..((((((.((((....))))..))--)------))))))..)))))..))).))...)))).. ( -27.60)
>DroSim_CAF1 188 98 + 1
UAAACACGGGCACU--AGCGGCAUGUGCACAUAACCUCAAAUGAUUACAGAGUGCAUAGAGAUGUUGCU--U------UAUGUGUGUGUGUUUCUGCUGUUUCCCGGA
......((((....--(((((((...(((((((..(((...........))).((((((((......))--)------))))).)))))))...))))))).)))).. ( -31.70)
>DroEre_CAF1 187 85 + 1
UAAACACAGACUCC--AGCGGCAUGUGCACAUAACCUCAAAUGC-----------AUAGAGAUGUGCCU----------GUGUGUGUGUGUUUCUGCUGUUUCUCGGA
...........(((--(((((((...(((((((....((...((-----------(((....)))))..----------.))..)))))))...)))))))....))) ( -23.90)
>DroYak_CAF1 188 93 + 1
UAAACACGGGCACU--AGCGGCAUGUGCACAUAACCUCAAAUGAUU---------ACAGAGAUGUGCCU--UUGUU--UGUGUGUGUAUGUUUCUGCUGUUUCUCGGA
......((((...(--(((((((((..(((((((..((....))..---------((((((......))--)))))--))))))..))))...))))))...)))).. ( -27.90)
>consensus
UAAACACGGGCACU__AGCGGCAUGUGCACAUAACCUCAAAUGAUUACAGAGUGCAUAGAGAUGUGCCU__U______UGUGUGUGUGUGUUUCUGCUGUUUCCCGGA
......((((......((.(((((..(((((((.............................................)))))))..))))).)).......)))).. (-13.75 = -14.12 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:52 2006