Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,334,548 – 14,334,647 |
Length | 99 |
Max. P | 0.745576 |
Location | 14,334,548 – 14,334,647 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 78.24 |
Mean single sequence MFE | -36.72 |
Consensus MFE | -28.69 |
Energy contribution | -27.58 |
Covariance contribution | -1.11 |
Combinations/Pair | 1.46 |
Mean z-score | -1.14 |
Structure conservation index | 0.78 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.745576 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14334548 99 + 20766785 GCCGGGAUUGGGAAUCGGACUGAAGGUCCUGGCCGCCGUGGGAGCAGCCGCCUAUGGAGUCAGUCAGUCCCUGUACACCGGUAAGGA-U--------AAAGCCGAUAG (((((.((.((((....((((((.(((....))).(((((((........)))))))..))))))..)))).))...)))))..((.-.--------....))..... ( -39.80) >DroVir_CAF1 432 107 + 1 ACCUGGCCUGGGAAUUGGACUGAAGCUCUUGGCUGCCGUGGGUGCAGCAGCCUAUGGUGUCAGUCAAUCCUUGUAUACCGGUAAGUU-CUUAGAUAUACUACAAAUAG ..((((...((((....((((((.(((...((((((.((....)).))))))...))).))))))..))))......))))......-.................... ( -32.60) >DroEre_CAF1 58 99 + 1 GCCUGGACUGGGAAUCGGACUGAAGGUCCUGGCUGCCGUGGGAGCCGCCGCUUAUGGUGUCAGCCAGUCCCUGUACACCGGUAAGCA-U--------AUAGCCGAUCG .(((.....))).(((((.(((..(((...((((.(....).)))))))((((((((((((((.......))).))))).)))))).-.--------.)))))))).. ( -36.80) >DroYak_CAF1 58 99 + 1 GCCGGGACUGGGAAUCGGACUGAAGGUCCUGGCUGCCGUGGGAGCUGCCGCCUAUGGUGUCAGCCAGUCCCUGUACACCGGUAAGCA-U--------AUAGCCGAUCG ((.((((((((.....((((.....))))((((.((((((((........)))))))))))).)))))))).))....((((..((.-.--------...))..)))) ( -42.30) >DroAna_CAF1 58 99 + 1 ACCGGGAUUGGGAAUUGGAUUGAAGCUCCUGGCCGCAGUUGGAGCCGCCGCCUAUGGUGUCAGCCAGUCCUUGUAUACUGGUAAGUA-C--------AAAACUAAUUU (((((.((.((((.((((.((((.(((((.(((....))))))))(((((....))))))))))))))))).))...))))).....-.--------........... ( -31.00) >DroPer_CAF1 5417 100 + 1 ACCUGGACUGGGUAUUGGACUGAAGCUCCUGGCGGCCGCAGGAGCUGUAGCCUAUGGUGUUAGCCAGUCCUUUUACACAGGUAACUGGG--------AAAUGGGAUUG .((((((((((.((..((.(((.((((((((.(....))))))))).)))))........)).)))))))((((...(((....))).)--------))).))).... ( -37.80) >consensus ACCGGGACUGGGAAUCGGACUGAAGCUCCUGGCUGCCGUGGGAGCAGCCGCCUAUGGUGUCAGCCAGUCCCUGUACACCGGUAAGUA_U________AAAGCCGAUAG (((((.((.((((...((.((((....((.(((.((.((....)).)).)))...))..))))))..)))).))...))))).......................... (-28.69 = -27.58 + -1.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:51 2006