Locus 4360

Sequence ID 2R_DroMel_CAF1
Location 14,333,281 – 14,333,371
Length 90
Max. P 0.543623
window6979

overview

Window 9

Location 14,333,281 – 14,333,371
Length 90
Sequences 5
Columns 107
Reading direction reverse
Mean pairwise identity 73.91
Mean single sequence MFE -31.16
Consensus MFE -15.85
Energy contribution -15.05
Covariance contribution -0.80
Combinations/Pair 1.39
Mean z-score -1.68
Structure conservation index 0.51
SVM decision value 0.02
SVM RNA-class probability 0.543623
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14333281 90 - 20766785
AG-------AU-GG-------AUGUCGUUUUGCCUCCCCCAUCAAGCGGCGAGGAAAAUUCCUCGAAUUAGCCGCGCUAAAAGCCAAAAUUUCGGGUGGUC--AACU
.(-------((-..-------..)))(((..(((.(((.......((((((((((....)))))......)))))((.....)).........))).))).--))). ( -26.40)
>DroSec_CAF1 9468 102 - 1
AGGGAUGUGAU-GGAGGGACAAUGUCGUUUUGCCUC--CCAUCAAGUGGCGCGGAUAAUUCCUCGAAUUAGCCGCGCUAAAAGCAAACAUUUCGGAUGGCC--AGCU
.(..(((((((-((..((.(((.......)))))..--)))))...((((((((.((((((...)))))).)))))))).......))))..)((....))--.... ( -39.30)
>DroSim_CAF1 10205 102 - 1
AGGGAUGUGAU-GGAGGGACAAUGUCGUUUUGCCUC--CCAUCAAGUGGCGCGGAAAAUUCCUCGAAUUAGCCGCGCUAAAAGCCAACAUUUCGGAUGGCC--AGCU
.(..(((((((-((..((.(((.......)))))..--)))))...((((((((..(((((...)))))..)))))))).......))))..)((....))--.... ( -38.40)
>DroEre_CAF1 9483 96 - 1
AGGGAUGUGCAG--AAAGACAUUG---UUUUUC-GA--CUGUCAAGGGGCGCGGAAAAUUCCUCGAAUUAACUGCGCUAAAAGCCGAAA-UUCGGGUAGCC--AGCU
...((((.(..(--((((((...)---))))))-..--)))))..(((((((((..(((((...)))))..))))))).....(((...-..)))....))--.... ( -25.20)
>DroAna_CAF1 10546 95 - 1
AGGGAUGUGAA-----AGACUCUG---UUUUGC-GG--CUGUCAACUGGCGUGGAAAAUUCCUCGAAUUAGUUGCGCUAAAAGCCGGAA-UUAGGAUGGCUUCCAAU
..(((.((.(.-----....(((.---..((.(-((--((......(((((..(..(((((...)))))..)..)))))..))))).))-...)))).)).)))... ( -26.50)
>consensus
AGGGAUGUGAU_GGA_AGACAAUGUCGUUUUGCCUC__CCAUCAAGUGGCGCGGAAAAUUCCUCGAAUUAGCCGCGCUAAAAGCCAAAAUUUCGGAUGGCC__AGCU
......................................(((((...((((((((..(((((...)))))..))))))))...............)))))........ (-15.85 = -15.05 +  -0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:47 2006