| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,327,501 – 14,327,621 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 14,327,501 – 14,327,621 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.85 |
| Mean single sequence MFE | -22.27 |
| Consensus MFE | -14.28 |
| Energy contribution | -13.73 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.64 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14327501 120 + 20766785 UUUGAAAUUGAAUUGAAUUGAAAUUGAAAUGGAUAUUCCAUAGGUUGGUAUUGGAAAUGUAUGUCUAUGUCAAAUGGCUGAAUUCUAAUGAAUGCCACACGGUACUAGAAGAAGUGGUAU .......................((((.((((((((((((...........)))).....)))))))).))))((.(((...(((((.....((((....)))).)))))..))).)).. ( -21.10) >DroSec_CAF1 3941 97 + 1 UUUGAAAA-------------------UAUGGUUUUUCAAUCAGUUGGUAUUGGAAAAGUAUGUCUAUGUCAAAUGGCUAGAUUCUAA----UACUACACAGUACUAGAAGAAGUGAUAU .(((((((-------------------......)))))))((..(((((((((....((((((((((.(((....))))))))....)----))))...)))))))))..))........ ( -23.10) >DroSim_CAF1 4073 97 + 1 UUUGAAAA-------------------UAUGGUUUUUCAAUAAGUUGGUAUUGGAAAAGUGUGUCUAUGUCAAAUGGCUAGAUUCUAA----UACUACACGGUACUAGAAGAAGUGGUAC .(((((((-------------------......)))))))...((((((((((((.......(((((.(((....)))))))))))))----))))).)).((((((.......)))))) ( -22.61) >consensus UUUGAAAA___________________UAUGGUUUUUCAAUAAGUUGGUAUUGGAAAAGUAUGUCUAUGUCAAAUGGCUAGAUUCUAA____UACUACACGGUACUAGAAGAAGUGGUAU ............................(((.((((((((((......)))))))))).)))...........((.(((...(((((.....((((....)))).)))))..))).)).. (-14.28 = -13.73 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:45 2006