Locus 4357

Sequence ID 2R_DroMel_CAF1
Location 14,327,218 – 14,327,314
Length 96
Max. P 0.560479
window6975

overview

Window 5

Location 14,327,218 – 14,327,314
Length 96
Sequences 5
Columns 96
Reading direction reverse
Mean pairwise identity 86.04
Mean single sequence MFE -33.12
Consensus MFE -24.00
Energy contribution -26.72
Covariance contribution 2.72
Combinations/Pair 1.03
Mean z-score -1.63
Structure conservation index 0.72
SVM decision value 0.05
SVM RNA-class probability 0.560479
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14327218 96 - 20766785
AGGUGGCCAAGUGAGUGGACCUUGUCUGGGGCAAGUUGUGACAUCUUGCCACUUGACGGCCAUUAUCCCACGAACAGCAACGACACCCGGCUAUCA
.(((((((..((((((((.((..(((.((((((((.((...)).)))))).)).))))))))))......((........)).)))..))))))). ( -34.30)
>DroSec_CAF1 3763 76 - 1
AGGUGGCCAAGUGACUGGACCUUGUCUGGGGCAAGUUGUGGCAUCUUGCCACUUGACGGCCAUUAUCCCACGAACA--------------------
.(((((((..((..(..(((...)))..).))..((((((((.....)))))..))))))))))............-------------------- ( -27.10)
>DroSim_CAF1 3796 96 - 1
AGGUGGCCAAGUGACUGGACCUUGUCUGGGGCAAGUUGUGACAUCUUGCCACUUGACGGCCAUUAUCCCACGAACAGCAACGAGACCCGGCUAUCA
.(((((((..((((.(((.((..(((.((((((((.((...)).)))))).)).))))))))))))....((........))......))))))). ( -30.20)
>DroEre_CAF1 3763 96 - 1
AGGUGGCCAAGUGAGUGGACCUUGUCUGGGGCAAGCGGUGACAUCUUGCCACUUGAAGGCCACUAUCCCCCGAACGCCAAUGACACCGGGCUAUCA
.(((((((..((((((((.(((..((.((((((((.(....)..)))))).)).)))))))))).((....))..........)))..))))))). ( -37.80)
>DroYak_CAF1 3848 96 - 1
AGGUGGCCAAGUGAGUGGGCCUUGUCUGGGGCAAGUUGUGACAUCUUGCCACUUGACGGCCAUUAUCCCCCGAACACCAACGACACCGGGCUAUCA
.(((((((..(((....((((..(((.((((((((.((...)).)))))).)).))))))).........((........)).)))..))))))). ( -36.20)
>consensus
AGGUGGCCAAGUGAGUGGACCUUGUCUGGGGCAAGUUGUGACAUCUUGCCACUUGACGGCCAUUAUCCCACGAACACCAACGACACCCGGCUAUCA
.(((((((..((((((((.((..(((.((((((((.........)))))).)).)))))))))).((....))..........)))..))))))). (-24.00 = -26.72 +   2.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:44 2006