Locus 4356

Sequence ID 2R_DroMel_CAF1
Location 14,325,587 – 14,325,677
Length 90
Max. P 0.572644
window6974

overview

Window 4

Location 14,325,587 – 14,325,677
Length 90
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 79.95
Mean single sequence MFE -12.30
Consensus MFE -7.82
Energy contribution -8.82
Covariance contribution 1.00
Combinations/Pair 1.07
Mean z-score -1.45
Structure conservation index 0.64
SVM decision value 0.08
SVM RNA-class probability 0.572644
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14325587 90 - 20766785
UAAUCUCUGUCAGCAAACUCGAGAUUAAACAAACACCGAACAUUAGC-CCACAACUACAAUACAUA-GAGAUAUAGUUUUAUAUCUCA--GUAA
(((((((.((......))..)))))))....................-..................-((((((((....)))))))).--.... ( -13.60)
>DroSec_CAF1 2140 85 - 1
UAAUCUCUGUCAGCAAACUCGAGAUAAAACAAACACCGAACAUUAGC-CCACAACAA-----CAUA-GAGAUAUAGUUUCAUAUCUCA--GUAA
..(((((.((......))..)))))......................-.........-----....-(((((((......))))))).--.... ( -11.00)
>DroSim_CAF1 2137 85 - 1
UAAUCUCUGUCAGCAAACUCGAGAUAAAACAAACACCGAACAUUAGC-CCACAACUA-----CAUA-GAGAUAUAGUUUCAUAUCUCA--GUAA
..(((((.((......))..)))))......................-.........-----....-(((((((......))))))).--.... ( -11.00)
>DroEre_CAF1 2089 82 - 1
UAAUCUCCGCCAGCAAACUCGAGAUUAAACAAACACCGAACACUAGC-CCA---CUA-----CAUA-CAGAUAUGGUUUCAUAUCUGA--GUGA
(((((((.............)))))))....................-...---...-----(((.-((((((((....)))))))).--))). ( -16.42)
>DroYak_CAF1 2143 83 - 1
UAAUCUCUGUCAGCCAACGCGAGAUUAAACAAACAUCGAACAUUAGCCCCA---CUA-----CAUG-CAGAUAUAGUUUCAUAUCUAA--GUAC
((((((((((......))).))))))).............((((((.....---)))-----.)))-.((((((......))))))..--.... ( -10.70)
>DroAna_CAF1 2552 83 - 1
UAAUCUCUGUCACUAAAUCCGAGAUUAAAUAAACAGGGGACAUUAGC-UGGGAA--------CAUAUGUGAGACAAUU--AUAUCUGACGAUAU
(((((((.(.........).)))))))........(....)......-((....--------))..(((.(((.....--...))).))).... ( -11.10)
>consensus
UAAUCUCUGUCAGCAAACUCGAGAUUAAACAAACACCGAACAUUAGC_CCACAACUA_____CAUA_GAGAUAUAGUUUCAUAUCUCA__GUAA
(((((((.............)))))))........................................(((((((......)))))))....... ( -7.82 =  -8.82 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:43 2006