Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,303,914 – 14,304,005 |
Length | 91 |
Max. P | 0.997558 |
Location | 14,303,914 – 14,304,005 |
---|---|
Length | 91 |
Sequences | 4 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.62 |
Mean single sequence MFE | -27.00 |
Consensus MFE | -20.33 |
Energy contribution | -19.70 |
Covariance contribution | -0.63 |
Combinations/Pair | 1.29 |
Mean z-score | -2.64 |
Structure conservation index | 0.75 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997558 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14303914 91 + 20766785 ----------AAUUUUAUCGGAACUACCUUAUU------ACAAGUUGGUUUCGAUACGGGCAAACAGCAGGUGACCUCUUGCUUUUGGUUUGUUUUCAAAAAUGGAA ----------.....(((((((((((.(((...------..))).))))))))))).((((((((((((((......))))))....))))))))............ ( -24.80) >DroSec_CAF1 33102 91 + 1 ----------AAUUUCAUCGGAACUACCUUCUU------CCAAAUUGGUUUCGAUACGAGCAAACCGCAGGUGACCUCUUGCUUUUGGUUUGUUUCCAAAAUUGGAA ----------......((((((((((.......------......))))))))))...(((((((((.(((..(....)..))).)))))))))((((....)))). ( -25.22) >DroSim_CAF1 35139 89 + 1 ----------AACUUCAUCGGAACUACCUUAUU------ACAAGUUGGUUUCGAUACGAGCAAGCAGCAGGUGACCUCUUGCUUUUGGUUUGUUCC--AAAUUGGAA ----------...(((((((((((((.(((...------..))).))))))))))..((((((((((((((......))))))....)))))))).--.....))). ( -27.30) >DroEre_CAF1 33736 107 + 1 UUUCAUCAAAAUUUUCAUCGAAACUGCCUUAUUUGGCUAACAAGUUGGCUUCGAUGCAGGCAAGCAGCAGGUGAUCUCUUGAUCUUGUUCUGUUGCCAAAAUUGGAG .....((((......(((((((...(((..(((((.....))))).)))))))))).......((((((((.((((....))))....)))))))).....)))).. ( -30.70) >consensus __________AAUUUCAUCGGAACUACCUUAUU______ACAAGUUGGUUUCGAUACGAGCAAACAGCAGGUGACCUCUUGCUUUUGGUUUGUUUCCAAAAUUGGAA ................((((((((((.(((...........))).))))))))))(((((((((.((((((......)))))))))).))))).............. (-20.33 = -19.70 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:34 2006