Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,297,837 – 14,297,930 |
Length | 93 |
Max. P | 0.737151 |
Location | 14,297,837 – 14,297,930 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.57 |
Mean single sequence MFE | -18.40 |
Consensus MFE | -7.45 |
Energy contribution | -6.85 |
Covariance contribution | -0.60 |
Combinations/Pair | 1.15 |
Mean z-score | -2.49 |
Structure conservation index | 0.40 |
SVM decision value | 0.44 |
SVM RNA-class probability | 0.737151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14297837 93 + 20766785 UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCCCUUGGCAAAACUCUAUCCCCAUCCCC-GUUUUGUUAAUUUCAAUUAACCACAACAAA ..((..(((((...))))).))((((((......------------....((((((((((...............-))))))))))..........)))))).... ( -16.81) >DroSec_CAF1 27085 93 + 1 UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCCCUUUGCAAAUCUCUAUCCCCAUCCCC-GUUUCGUUAAUUUCAAUUAACCACAACAAA ..((((((((...(((((((....)))..)))).------------......))))))))...............-(((..((((((....))))))...)))... ( -14.40) >DroSim_CAF1 27189 93 + 1 UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCCCUUUGCAAAUCUCUAUCCCCAUCCCC-GUUUCGUUAAUUUCAAUUAACCACAACAAA ..((((((((...(((((((....)))..)))).------------......))))))))...............-(((..((((((....))))))...)))... ( -14.40) >DroEre_CAF1 27696 92 + 1 UCGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC------------CCC-CUUGCAAAUCGGUAUCCCCAUCCCC-GUUUUGUUAAUUUCAAUUAACCACAACAAA ((((((((((...(((((((....)))..)))).------------...-..)))))))))).............-(((..((((((....))))))...)))... ( -17.80) >DroAna_CAF1 33846 103 + 1 UUGAUUUGCAUUUAGUGCAUUCUUGUGGACAUGGCUGGGACAUGGCCCCCCAGG-UCCCCUCUA--CCCACUCCUUUGUCUGCUAAUUUCAAUUAGCCGUAAGAGA ..((..(((((...))))).))..((((...(((..(((((.(((....))).)-))))..)))--.))))..((((....((((((....))))))....)))). ( -28.60) >consensus UUGAUUUGCAUUUAGUGCAUUCUUGUGGACACUC____________CCCCUUUGCAAAUCUCUAUCCCCAUCCCC_GUUUUGUUAAUUUCAAUUAACCACAACAAA ..((..(((((...))))).))..((((.......................................)))).....(((..((((((....))))))...)))... ( -7.45 = -6.85 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:32 2006