Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,292,588 – 14,292,688 |
Length | 100 |
Max. P | 0.544593 |
Location | 14,292,588 – 14,292,688 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 81.85 |
Mean single sequence MFE | -24.28 |
Consensus MFE | -15.88 |
Energy contribution | -16.97 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.19 |
Mean z-score | -1.56 |
Structure conservation index | 0.65 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544593 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14292588 100 + 20766785 UUCGAAGCA------AUCUUCAUUCGAUGCCUCUUUCCUCAACUGAAUGAAUGAAUGAAGGGCAACAUGCGAAUGGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU ...(((((.------.....((((((.((((.((((..(((..........)))..)))))))).....)))))))))))...(((((((....)))))))..... ( -24.70) >DroPse_CAF1 24010 96 + 1 -CCGAAACG------ACCUUUCGUCACCGGCCACCUUUUGCAUUGGUUGAAU---UGAACGACAAUUCGGGGAUCGCUGCAAUUGCGUGAAAUAUCGUGCAUAACU -(((..(((------(....))))...))).((((..(((((.(((((((((---((.....))))))...))))).)))))..).)))................. ( -21.40) >DroSec_CAF1 21771 100 + 1 UUCGAAGCA------AUCUUCAUUCAAUGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACAUGCGAAUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU ...(((((.------.((((((((((((.............)))))))))).)).((.(((....))).))....)))))...(((((((....)))))))..... ( -25.82) >DroSim_CAF1 21821 100 + 1 UUCGAAGCA------AUCUUCAUUCAAUGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACAUGCGAAUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU ...(((((.------.((((((((((((.............)))))))))).)).((.(((....))).))....)))))...(((((((....)))))))..... ( -25.82) >DroEre_CAF1 22344 106 + 1 UUCGAAGCUUGAACUCCGUUCAUUCAAUGCCUCUUUCCUCAAUUGAAUGAAUGAAUGAAUGGCAACUUGCGAAUCGCCUCAAUUGCGUGAAAUUUCGUGCAUAACU ...((.((........((((((((((((.............))))))))))))...((.(.((.....)).).)))).))...(((((((....)))))))..... ( -23.72) >DroYak_CAF1 22340 106 + 1 UUCGCAGCUUGAACUCUGUUCAUUCAACGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACUUGCGAGUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU (((((((.(((....(((((((((((........((((((....))).))))))))))))))))).)))))))..........(((((((....)))))))..... ( -24.20) >consensus UUCGAAGCA______AUCUUCAUUCAAUGCCUCUUUCUUCAAUUGAAUGAAUGAAUGAAUGGCAACAUGCGAAUCGCUUCAAUUGCGUGAAAUAUCGUGCAUAACU ...(((((..........((((((((((.............)))))))))).....((.(.((.....)).).)))))))...(((((((....)))))))..... (-15.88 = -16.97 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:30 2006