| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,291,271 – 14,291,391 |
| Length | 120 |
| Max. P | 0.591179 |
| Location | 14,291,271 – 14,291,391 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 82.94 |
| Mean single sequence MFE | -48.18 |
| Consensus MFE | -31.26 |
| Energy contribution | -31.10 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.04 |
| Structure conservation index | 0.65 |
| SVM decision value | 0.12 |
| SVM RNA-class probability | 0.591179 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14291271 120 + 20766785 GCUCCCUUGGCGCUGAUCUUCUUCUGCAACGACUUGACCAAAUCCGGCGAGAUCGUCGACGAGUCAAUGAAGAUGGUGUCCUUGUUGACGCCAUCGGCAGUCAUCUCAUCGUAGGAGGCA ((..(((..(((.(((.......((((...((((((........(((((....))))).))))))......(((((((((......))))))))).)))).....))).))))))..)). ( -43.60) >DroVir_CAF1 31701 120 + 1 GCGCCCUUGGCGCUGAUGCGCUUCUGCAGCGACUUGACCAGAUUGGGAUCAAUGGUGGAGGAGUCAAUAAAGAUGGUGUUCUUGUUGACGCCAUUGGCGGUCAUCUCCUCGUACGAGGCG (((((...))))).....(((((((((((.((..(((((.(((....)))....((.((((.((((((((.((......)))))))))).)).)).)))))))..)))).))).)))))) ( -44.40) >DroGri_CAF1 26450 120 + 1 GCACCUUUGGCACUGAUGCGCUUCUGCAGCGACUUCACCAACACUGGGUCAAUGGUGGAGGAGUCAAUGAAGAUGGUGUUCUUAUUGACACCGUUAGCGGUCAUCUCCUCAUACGAAGCA .((((.(((((..(((..((((.....))))...)))(((....)))))))).))))((((((....((..(((((((((......)))))))))..)).....)))))).......... ( -42.70) >DroMoj_CAF1 28969 120 + 1 GCGCCCUUGGCGCUGAUGCGCUUCUGCAGGGACUUGACGAGCGUGGGAUCGAUCGUGGAGGAGUCAAUGAAGAUGGUGUUCUUGUUGACGCCAUUGGCGGUCAUCUCCUCGUACGAGGCA ((.((((.(((((....))))).....)))).(((((((((...(((((.((((((.((((.((((((.((((......)))))))))).)).)).)))))))))))))))).)))))). ( -52.60) >DroAna_CAF1 25799 120 + 1 GCGCCCUUGGCGCUGAUCUUCUUCUGCAGGCUCUGCACCAGCUCGGGGGAGAUCGUCGAGGAGUCGAUGAAGAUGGUGUUCUUGUUGACGCCGUCGGCAGUCAUCUCCUCGUACGAGGAC (((((...))))).((((((((((.((.((.......)).))..))))))))))(((((((((..(((...(((((((((......)))))))))....)))..))))))).))...... ( -54.30) >DroPer_CAF1 22917 120 + 1 GCUCCCUUGGCGCUGAUGCGCUUCUGCAGAGUCUUCACCAGCUCCGGGGCAAUGGUGGAGGAGUCGAUGAAGAUGGUGUCCUUGUUGACGCCAUCGGCAGUCAUCUCCUCGUACGAUUUG ((......(((((....)))))...)).(((((..((((((((....)))..)))))((((((..(((...(((((((((......)))))))))....)))..))))))....))))). ( -51.50) >consensus GCGCCCUUGGCGCUGAUGCGCUUCUGCAGCGACUUCACCAGCUCGGGGGCAAUCGUGGAGGAGUCAAUGAAGAUGGUGUUCUUGUUGACGCCAUCGGCAGUCAUCUCCUCGUACGAGGCA ((.((...)).))......((((((((..........((......))..........((((((....((..(((((((((......)))))))))..)).....))))))))).))))). (-31.26 = -31.10 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:29 2006