Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,288,563 – 14,288,680 |
Length | 117 |
Max. P | 0.838545 |
Location | 14,288,563 – 14,288,680 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.36 |
Mean single sequence MFE | -34.64 |
Consensus MFE | -20.51 |
Energy contribution | -21.77 |
Covariance contribution | 1.25 |
Combinations/Pair | 1.25 |
Mean z-score | -1.54 |
Structure conservation index | 0.59 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.838545 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14288563 117 + 20766785 UCAGACGCGCAACAAUCCCAAGAAGAAACUGAAAGGAUCAUAGUCCAUAACCAGCGCUGAUGCGGCAAUGGCGUCCCUUUCGCCGCUGCAGUCCAGCGCACU---AGGAGGAGCAGCAGG ......((((.....(((................((((....)))).......((((((.((((((...((((.......))))))))))...))))))...---.)))...)).))... ( -37.10) >DroVir_CAF1 29152 101 + 1 CCAGGCACGCAACAAUCCCAAGAAGAAACUCAAGGGCUCAUAGUCCAUAACCAGCGCUGAUUCGGUGCUGGUG------GCACCGCUGCACCACAGCGCAAC---UGGUC---------- ((((....((.......................((((.....))))...((((((((((...)))))))))).------))..(((((.....)))))...)---)))..---------- ( -34.60) >DroPse_CAF1 20050 112 + 1 UCAGACCCGCAGCAAUCCAAAGAAAAAGCUCAAGGGCUCAUAGUCUAUAACCAGCGCUGAUGCGGCAAUGGCGAUGGUGGCGCCGCUGCAGUCCAGCGCGAUUAUUGGAGGA-------- .....((..(((.((((...(((...((((....)))).....))).......((((((.((((((...((((.......))))))))))...)))))))))).)))..)).-------- ( -37.70) >DroMoj_CAF1 25990 98 + 1 UCUGGCACGAAAUAAUCCCAAAAAGAAAUUGAAGGGCUCAUAGUCUAUAACCAGCGCUGAUGCGGUAAUUG---------GGCCGCUGCAGCACAGCGCAUC---UGGUA---------- ..(((.((........(((...((....))...)))......)))))..((((((((((.((((((.....---------....))))))...))))))...---)))).---------- ( -25.64) >DroAna_CAF1 21413 98 + 1 UCAGACCCGCAACAAUCCCAAAAAGAAACUGAAAGGAUCAUAGUCUAUAACCGGCGCGGAUGCGGC------------UUCCUUGCCGCAGUCCAGCGCCAC---CAGUGGAG------- ......((((.............(((...(((.....)))...)))......((((((((((((((------------......)))))).))).)))))..---..))))..------- ( -35.10) >DroPer_CAF1 20055 112 + 1 UCAGACCCGCAGCAAUCCAAAGAAAAAGCUCAAGGGCUCAUAGUCUAUAACCAGCGCUGAUGCGGCAAUGGCGAUGGUGGCGCCGCUGCAGUCCAGCGCGAUUAUUGGAGGA-------- .....((..(((.((((...(((...((((....)))).....))).......((((((.((((((...((((.......))))))))))...)))))))))).)))..)).-------- ( -37.70) >consensus UCAGACCCGCAACAAUCCCAAGAAGAAACUCAAGGGCUCAUAGUCUAUAACCAGCGCUGAUGCGGCAAUGGCG______GCGCCGCUGCAGUCCAGCGCAAC___UGGAGGA________ .................................((((.....)))).......((((((.((((((...((((.......))))))))))...))))))..................... (-20.51 = -21.77 + 1.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:28 2006