Locus 4343

Sequence ID 2R_DroMel_CAF1
Location 14,286,684 – 14,286,785
Length 101
Max. P 0.939436
window6958

overview

Window 8

Location 14,286,684 – 14,286,785
Length 101
Sequences 6
Columns 101
Reading direction reverse
Mean pairwise identity 75.79
Mean single sequence MFE -23.55
Consensus MFE -12.64
Energy contribution -13.58
Covariance contribution 0.95
Combinations/Pair 1.19
Mean z-score -2.14
Structure conservation index 0.54
SVM decision value 1.28
SVM RNA-class probability 0.939436
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14286684 101 - 20766785
UAUCACUACCAGUUAAUAGUUAUCAACUUACCUGAAUUUGAAGUGAGUAUCAUUCAGCUUGCUGCCAUCUUCAGCUAAGGGCAAAUCCUUGGCUUUAACCA
...........(((((................((((..((.((..(((........)))..))..))..))))((((((((....)))))))).))))).. ( -22.80)
>DroVir_CAF1 27266 93 - 1
U--UACUCUA------GUCUCAAUUACUCACCUGAACUUGAAGUGUAUGUCGAUGAGCUUGCUGCCAUCCUCAGCAAGCGGCAGAUCUUUGGCCUUGACCA
.--(((((.(------((.(((..........)))))).).))))...(((((...((((((((.......))))))))(((.........)))))))).. ( -22.50)
>DroSec_CAF1 15918 101 - 1
UAUCACUACCAGUUAAUAGUUAUUAACUUACCUGAACUUGAAGUGAGUAUCAUUCAACUUGCUGCCAUCUUCAGCUAAGGGCAAAUCCUUGGCUUUAACCA
..........(((((((....)))))))....((((..((.((..(((........)))..))..))..))))((((((((....))))))))........ ( -23.80)
>DroSim_CAF1 15933 101 - 1
UAUCACUACCAGUUAAUAGUGAUCAACUUACCUGAAUUUGAAGUGAGUAUCAUUCAACUUGCUGCCAUCUUCAGCUAAGGGCAAAUCCUUGGCUUUAACUA
.(((((((........))))))).........((((..((.((..(((........)))..))..))..))))((((((((....))))))))........ ( -26.00)
>DroEre_CAF1 16233 91 - 1
UAAUCGUGG----------UAAUCAACUUACCUGAAUUUGAAGUGAGUAUCAUUCAGCUUGCUGCCAUCUUCAGCUAAGGGCAAAUCCUUGGCUUUGACCA
.......((----------(((.....)))))((((..((.((..(((........)))..))..))..))))((((((((....))))))))........ ( -24.40)
>DroMoj_CAF1 24085 90 - 1
U-----AUUA------UCUUUAUGGACUUACCUAAACUUAAAGUGUAUGUCAAUGAGCUUGCUGCCGUCUUCGGCUAGCGGCAGAUCUUUGGCCUUGACCA
.-----....------.....(((.((((...........)))).)))(((((.(.(((..((((((((....)...)))))))......))))))))).. ( -21.80)
>consensus
UAUCACUACC______UAGUUAUCAACUUACCUGAACUUGAAGUGAGUAUCAUUCAGCUUGCUGCCAUCUUCAGCUAAGGGCAAAUCCUUGGCUUUAACCA
................................((((..((.(((((((........)))))))..))..))))((((((((....))))))))........ (-12.64 = -13.58 +   0.95)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:27 2006