Locus 4342

Sequence ID 2R_DroMel_CAF1
Location 14,284,996 – 14,285,094
Length 98
Max. P 0.826009
window6957

overview

Window 7

Location 14,284,996 – 14,285,094
Length 98
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 90.63
Mean single sequence MFE -32.20
Consensus MFE -32.00
Energy contribution -32.00
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.00
Structure conservation index 0.99
SVM decision value 0.70
SVM RNA-class probability 0.826009
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14284996 98 - 20766785
------CAAUAAA-AAAGUUUCC--UUCUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
------.......-.........--...(((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))).... ( -32.00)
>DroPse_CAF1 16232 106 - 1
CUUAAACAAAAAG-ACACAUUGCUGUUCUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
...........((-(.(((....))))))((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))..... ( -32.60)
>DroSim_CAF1 14200 98 - 1
------CAAUAAA-AAAGCUUCC--UUCUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
------.......-.........--...(((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))).... ( -32.00)
>DroEre_CAF1 14513 98 - 1
------CAAUAAA-AAAGUUUCU--CUCUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
------.......-.........--...(((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))).... ( -32.00)
>DroYak_CAF1 14475 99 - 1
------UAAUAAAAAAAGUUUCC--AACUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
------.................--...(((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))).... ( -32.00)
>DroPer_CAF1 16231 106 - 1
CUUAAACAAAAAG-AGACAUUGCUGUUCUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
...........((-((.((....))))))((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))..... ( -32.60)
>consensus
______CAAUAAA_AAAGUUUCC__UUCUGGCAGCGGUGGGAUUCGAACCCACGCCUCCGAGGAGACUGGUGCCUUAAACCAGCGCCUUAGACCGCUCGGCCACGCU
............................(((((((((((((.......)))))...((..(((.(.(((((.......)))))).)))..)).))))..)))).... (-32.00 = -32.00 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:26 2006