Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,270,795 – 14,270,908 |
Length | 113 |
Max. P | 0.846611 |
Location | 14,270,795 – 14,270,908 |
---|---|
Length | 113 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 81.31 |
Mean single sequence MFE | -33.12 |
Consensus MFE | -24.85 |
Energy contribution | -24.67 |
Covariance contribution | -0.19 |
Combinations/Pair | 1.36 |
Mean z-score | -1.97 |
Structure conservation index | 0.75 |
SVM decision value | 0.77 |
SVM RNA-class probability | 0.846611 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14270795 113 - 20766785 AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUGAUUGUGAAAGUCAGUAGUGAGAGUGUGGGUCUCUGGAUUUCUUUGGGUUUCCAAUCUAAAAAGGAAAAAAUGCCUUUA ..............((.(((((((((..((((((((((.....)))))))..)))..)))))))))))((((..((....))..))))......(((((........))))). ( -36.00) >DroSec_CAF1 152 112 - 1 AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUCAUUGUGAAAGUCAGUAGUCAGAGUGUGGGUCUCUGGGUUCCUUUGAGUUUCCAAUCUAAAAAGGGAA-AAUGCUGUUA .(((......(((((.(((((((((.(((..(((.(((((....).)))))))..)))))))))))).)))))((((((.((........))...)))))).-...))).... ( -35.10) >DroSim_CAF1 152 112 - 1 AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUCAUUGUGAAAGUCAGUAGUCAGAGUGUGGCUCUCCGGAUUCCUUUGAGUUUCCAAUCUAAAAAGGGAA-AAUUCUUUUA .........((((((((((.(((((.(((..(((.(((((....).)))))))..)))))))).((....))..))))))))))...........((((((.-...)))))). ( -25.70) >DroEre_CAF1 154 112 - 1 AGGCUAAUGGACUCGAAGGCCCACAUCUUUAGCUGAUUGUGAAAGUCGGUGCUCAGAGUGUGGGUCUCUGGAUUCCUUUGAGUUUCCAAUCUAAAAACCGAA-AAUGCAUUUA ..((....(((.((.(((((((((((((...(((((((.....)))))))....))).))))))))).).)).)))((((.((((.........))))))))-...))..... ( -32.80) >DroYak_CAF1 152 110 - 1 AAGCUAAUGGACUCGAAGGCCCACAUCUUCAGCUGAUUGUGAAAGUCAGUACUCAGAGUGUGGGUCUCUGGAUUCCUCUGAGUUUCCAAUCUAAAAAAAGA---GUCAACUGG .........(((((((.(((((((((((...(((((((.....)))))))....))).))))))))))((((..(......)..))))...........))---)))...... ( -35.70) >DroPer_CAF1 2321 108 - 1 AAGCUGAUGGACUCAAAGGCCCAAUUCUUCAGCUGAUCAUGGAAGUCAGCCUGGAGCAAGUGGGUUUCCGGAUCCCUCUGACUCUCCAGUCUGGAAAGUGUA-UAAC----CA .....((.(((..(..(((((((.(((((((((((((.......))))).)))))).)).)))))))..)..))).))..(((.(((.....))).)))...-....----.. ( -33.40) >consensus AAGCUAAUCGACUCGAAGGCCCACAUCUUCAGCUGAUUGUGAAAGUCAGUAGUCAGAGUGUGGGUCUCUGGAUUCCUUUGAGUUUCCAAUCUAAAAAGGGAA_AAUGCAUUUA .........(((((((((((((((((((...(((((((.....)))))))....)).)))))))((....))..))))))))))............................. (-24.85 = -24.67 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:23 2006