Locus 434

Sequence ID 2R_DroMel_CAF1
Location 2,510,045 – 2,510,162
Length 117
Max. P 0.530677
window838

overview

Window 8

Location 2,510,045 – 2,510,162
Length 117
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 83.98
Mean single sequence MFE -27.62
Consensus MFE -18.26
Energy contribution -17.95
Covariance contribution -0.31
Combinations/Pair 1.21
Mean z-score -1.57
Structure conservation index 0.66
SVM decision value -0.01
SVM RNA-class probability 0.530677
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2510045 117 - 20766785
CAACUAUUGGGGUUUCCACGGCGGAAUAAUUUCCCAUUGACAUUCACAAAACGGCUAUGUGCCCUUCAUAGAUAAAAUAGCUCAAUGGAGAUAAGAUUUCGUCUGAGCCCUAAAAAG
......(((((((((....((((((((....((((((((((...........(((.....)))((....))........).))))))).))....)))))))).))))))))).... ( -33.30)
>DroSec_CAF1 19649 116 - 1
CAACUAUUGGGGUUUCCGCGGUGGAAUAAUUCCCCGUUGACAUUCA-AAAACGGCUAUGUUCCCUUCAUAGAUAAAAUAGCUCAUUGGAGAUAAGAUUUCGUCUAAGCCCUAAAAAG
......(((((((((..((((.(((.....))))))).(((.((((-(....((((((..((........))....))))))..)))))((.......))))).))))))))).... ( -28.30)
>DroSim_CAF1 19779 116 - 1
CAACUAUUGGGGUUUCCGCGGUGGAAUAAUUUCCCGUUGACAUUCA-AAAACGGCUAUGUUCCCUUCAUAGAUAAAAUAGCUCAAUGGAGAUAAGAUUUCGUCUAAGCCCUAAAAAG
......(((((((((..((((.((((((.....(((((........-..)))))...))))))((((((.((.........)).))))))........))))..))))))))).... ( -29.00)
>DroYak_CAF1 19120 100 - 1
CAACUAUUGGGGUUUCCGGGGUGGAAUAAUUUCCCAUUGAAAUUU----------------CCCUUUAUAGAUAAAAUGGCUU-UGGAAGAUAAGAUUUCCUUUAGGACCUACAAAG
.......((((.((((((((((((((....))))((((...((((----------------........))))..))))))))-))))))........(((....)))))))..... ( -19.90)
>consensus
CAACUAUUGGGGUUUCCGCGGUGGAAUAAUUUCCCAUUGACAUUCA_AAAACGGCUAUGUUCCCUUCAUAGAUAAAAUAGCUCAAUGGAGAUAAGAUUUCGUCUAAGCCCUAAAAAG
......((((((((((.((((.(((.....))))))).))............................((((..((((..(((....))).....))))..)))))))))))).... (-18.26 = -17.95 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:29 2006