Locus 4338

Sequence ID 2R_DroMel_CAF1
Location 14,256,621 – 14,256,727
Length 106
Max. P 0.541240
window6951

overview

Window 1

Location 14,256,621 – 14,256,727
Length 106
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 79.07
Mean single sequence MFE -22.20
Consensus MFE -14.20
Energy contribution -15.88
Covariance contribution 1.68
Combinations/Pair 1.16
Mean z-score -1.60
Structure conservation index 0.64
SVM decision value 0.02
SVM RNA-class probability 0.541240
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14256621 106 - 20766785
AUAAUGUAUGCUAAAGAGAAAUUUCGACUCAAAA-AAGGUCGGAAUUUCAAUCAAGAGCUCUGCAAAUCGUAGCUUUAAGCUCAAUCCAUAUA-----UAUUGAGUAGUUGU
.(((((((((.......((((((((((((.....-..))))))))))))......(((((((((.....)))).....)))))......))))-----)))))......... ( -28.30)
>DroSec_CAF1 14570 106 - 1
AUAAUGUAUUCUAAAGAGAAAUUUCGACACAAAA-UAUGUCGGAAUUUCGAUCAAGAGCUCUGCAAGUCGUAGCUUUAAGCUCAAUCCAUACA-----UAUGUAGUAUUUGU
...((((((........((((((((((((.....-..))))))))))))......(((((((((.....)))).....))))).....)))))-----)............. ( -26.70)
>DroSim_CAF1 19664 107 - 1
AUAAUGUAUUCUAAAGAGAAAUUUCGACACAAAAAAAGGUCGGAAUUUCAAUCAAGAGCUCUGCAAGUCGUAGCUUUAAGCUCAAUCCAUACA-----UAUGUAGUAGUUGU
...((((((........(((((((((((.(.......))))))))))))......(((((((((.....)))).....))))).....)))))-----)............. ( -25.50)
>DroEre_CAF1 13496 111 - 1
AUAAAAUAUACGAAAGAGAAAUUUCGAACCAAGA-AAUGCUGAAUUUUCAAUCAAGAGCUCCGCAAUUCGUAGCUUUAAGCUCCAACCCAUUGAAUGAUAACGAGUAGUUGU
..........(((((......)))))...(((((-(.(((.((.((((......)))).)).))).)))(.(((.....))).)......)))....(((((.....))))) ( -15.40)
>DroYak_CAF1 13711 106 - 1
-----AUAUACGAAAGAGAAAUUGCGAAACAAGU-AAUGCUAGAAUUCCAAUCAAGAGCUCAACAAGUCGCAGCUUUAAGCUCCAUCCAUAUGAAUGAGAACGAGUAGUUGU
-----.....(....).(((.((((((.....((-...(((.((.......))...)))...))...)))))).)))..((((..(((((....))).))..))))...... ( -15.10)
>consensus
AUAAUGUAUACUAAAGAGAAAUUUCGACACAAAA_AAUGUCGGAAUUUCAAUCAAGAGCUCUGCAAGUCGUAGCUUUAAGCUCAAUCCAUAUA_____UAUCGAGUAGUUGU
.................((((((((((((........))))))))))))......(((((..((........))....)))))............................. (-14.20 = -15.88 +   1.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:20 2006