Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,246,555 – 14,246,655 |
Length | 100 |
Max. P | 0.661771 |
Location | 14,246,555 – 14,246,655 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 79.82 |
Mean single sequence MFE | -29.22 |
Consensus MFE | -17.08 |
Energy contribution | -17.47 |
Covariance contribution | 0.39 |
Combinations/Pair | 1.26 |
Mean z-score | -1.82 |
Structure conservation index | 0.58 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.661771 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14246555 100 + 20766785 AGUGCAGUGCAUUAGCUUGUUGUCGGC-AAAGCCGUGGGAAAUGCGGG---AAAAACGAAGGGCUGAAGGCGGUGGGCU-AACUAACUUUAAUUGCAGCUGUAAA ..(((((((((((((((..((((((((-....(((((.....))))).---.....(....))))...)))))..))))-))...........)))).))))).. ( -30.30) >DroSec_CAF1 3254 100 + 1 AGUGCAGUGCAUUAGCUUGUUGUGGAA-AAAGCGGCGGGAAAUGCGGG---AAAAGCGAAGGGCUGAAGGCGGUCUGCU-AACUAACUUUAAUUGCAGCUGUAAA ..(((((((((((..((((((((....-...)))))))).)))))...---...(((...((((((....)))))))))-.................)))))).. ( -26.80) >DroSim_CAF1 3395 100 + 1 AGUGCAGUGCAUUAGCUUGUUGUGGAA-AAAGCGGCGGGAAAUGCGGG---AAAAGCGAAGGGCUGAAGGCGGUCUGCU-AACUAACUUUAAUUGCAGCUGUAAA ..(((((((((((..((((((((....-...)))))))).)))))...---...(((...((((((....)))))))))-.................)))))).. ( -26.80) >DroEre_CAF1 3427 97 + 1 AGUGCAGUGCAUUUGCUGGUUGUAGGG-AAAGCGGCGGCAAAUGCGGG---AAAAAC---GGGCUGAAGGCGGUGUGCU-AACUAACUUUAAUUGCGGCUGUAAA ..((((((((((((((((.((((....-...))))))))))))))...---.....(---(.(.(((((..(((.....-.)))..)))))..).)))))))).. ( -30.50) >DroYak_CAF1 3481 95 + 1 AGUGCAGUGCAUUAGCUUGUUGGGCGGAAAAGCG--GGCAAAAGCG-G---AAAAAC---GAGCUGAAGGCAGUGUGCU-AACUAACUUUAAUUGCGGCUGUAAA ((..((.(((.((((((((((..((......)).--.((....)).-.---...)))---)))))))..))).))..))-............((((....)))). ( -27.80) >DroAna_CAF1 3847 105 + 1 AGUGCAGUGCAUUAGGUUGUGCAGGAAGAGAGCGGUUUGCAGGGCGGUUGGCAGGGGCAGGGAGUGAGGCAAGCCCGUUGCACUAACUUUAAUUGCAGCUGUAAA ..(((((((((..(((((((((((...(..(((.(((.....))).)))..)..((((..(........)..)))).)))))).)))))....)))).))))).. ( -33.10) >consensus AGUGCAGUGCAUUAGCUUGUUGUGGAA_AAAGCGGCGGGAAAUGCGGG___AAAAACGAAGGGCUGAAGGCGGUCUGCU_AACUAACUUUAAUUGCAGCUGUAAA ..(((((((((...((((.((((........((..........))..........)))).))))(((((..(((.......)))..)))))..)))).))))).. (-17.08 = -17.47 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:19 2006