Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,245,263 – 14,245,360 |
Length | 97 |
Max. P | 0.843183 |
Location | 14,245,263 – 14,245,360 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 80.33 |
Mean single sequence MFE | -28.78 |
Consensus MFE | -13.51 |
Energy contribution | -14.87 |
Covariance contribution | 1.36 |
Combinations/Pair | 1.10 |
Mean z-score | -2.84 |
Structure conservation index | 0.47 |
SVM decision value | 0.76 |
SVM RNA-class probability | 0.843183 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14245263 97 + 20766785 --------------GAACGCAUCGUGAAAUCAGUCUUAAUUGGCACUAAUAAAAGGUGCUAAGUGG--CAUG--CAGAUGCCGU--AGACUGAAUCCGAAUCAAGUUCAGAAACAGA --------------((((...(((.((..(((((((...((((((((.......))))))))..((--(((.--...)))))..--))))))).))))).....))))......... ( -31.30) >DroSec_CAF1 2014 97 + 1 --------------GAACGCAUCGUGAAAUCAGUCUUAAUUGGCCCUAAUAAAAGGUGCUAAGUGG--CAUG--CAGAUGCCGU--AGACUGAAUCCGAAUCAAGUUCAGAAACAGA --------------((((...(((.((..(((((((...((((((((......))).)))))..((--(((.--...)))))..--))))))).))))).....))))......... ( -30.30) >DroSim_CAF1 2113 97 + 1 --------------GAACGCAUCGUGAAAUCAGUCUUAAUUGGCACUAAUAAAAGGUGCUAAGUGG--CAUG--CAGAUGCCGU--AGACUGAAUCCGAAUCAAGUUCAGAAACAGA --------------((((...(((.((..(((((((...((((((((.......))))))))..((--(((.--...)))))..--))))))).))))).....))))......... ( -31.30) >DroEre_CAF1 2181 111 + 1 GUGAAACGCAAACGGAACGCAUCGUGAAAUGAGUCUUAAUUGGCACUAAUAAAAGGUGCUAAGUGG--CAUG--CAGAUGCCGG--AGACUGAAUCCGAAUCAAAUUCAGAAACAGA .((((.......((((.(((...)))...(.((((((..((((((((.......)))))))).(((--(((.--...)))))))--))))).).)))).......))))........ ( -29.24) >DroYak_CAF1 2176 106 + 1 -----UCGCAAACGGAACGCAUCGUGAAAUGAGUCUUAAUUGGCACUAAUAAAAGGUGCUAAGUGG--CAUG--CAGAUGCCAG--AGUCGGAAUCCGAAUCAAAUUCAGAAACAGA -----.......((((.(((...)))...(((.((....((((((((.......)))))))).(((--(((.--...)))))))--).)))...))))................... ( -26.10) >DroPer_CAF1 1916 91 + 1 --------------GAAAACAGCUCGGAAUCAUUCUUAAUUGGCACUAAUAAAAGGCGCUAAGUGAGCGAUGCACAGAUGCCAGCCAGACCGAGAC------------UGAGACUGA --------------.....((((((((..((..(((...((((((((.........((((.....))))......)).))))))..)))..))..)------------)))).))). ( -24.46) >consensus ______________GAACGCAUCGUGAAAUCAGUCUUAAUUGGCACUAAUAAAAGGUGCUAAGUGG__CAUG__CAGAUGCCGG__AGACUGAAUCCGAAUCAAGUUCAGAAACAGA ..................(((((..........((....((((((((.......))))))))..))..........)))))........((((((.........))))))....... (-13.51 = -14.87 + 1.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:18 2006