Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,244,764 – 14,244,884 |
Length | 120 |
Max. P | 0.601365 |
Location | 14,244,764 – 14,244,884 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.78 |
Mean single sequence MFE | -55.77 |
Consensus MFE | -32.27 |
Energy contribution | -32.00 |
Covariance contribution | -0.27 |
Combinations/Pair | 1.44 |
Mean z-score | -1.76 |
Structure conservation index | 0.58 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.601365 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14244764 120 - 20766785 UCUGGAGAUAUCCCUGGGCCAGUUCACGGGUCGCGGCGUGGUCAAGGCCUUCGAUAUGGCUCCCCUGCUCAAGGGCGUGGCAUUGGGUCAAGUCCUGGCCACAGCCGCCUCCAUCACAUA ..(((((....(((((((....)))).)))..((((((((((((.((.(((.((((((.(.(((((.....)))).).).)))...)))))).))))))))).))))))))))....... ( -50.10) >DroVir_CAF1 1558 120 - 1 UUUGGAGAUCUCUCUGGGCCAGUUUCGCGGCGGCGGCGUGUUGCGCGCCUUCGAUUUGGCGCCCUUGUUAAAGGGCGUGGCUGCCGGACAGGUGCUGGCCACAGGCGCCUCCAUCACCUA ..(((((.....(((((((((((.((.(((((((((((((...)))))).........((((((((....)))))))).)))))))....)).))))))).))))...)))))....... ( -61.90) >DroGri_CAF1 15325 120 - 1 UUUGGAGAUCUCUUUGGGUCAGUUUCGUGGCGGCGGUGUUCUGCGCGCCUUUGAUCUGGCGCCCAUACUAAAGGGCGUGGCAGCGGGUCAGGUGCUGGCCACGGGCGCCUCCAUAACCUA ..(((((((((....))))).(((.((((((.((((....))))((((((..((((((((((((........)))))).....))))))))))))..)))))))))...))))....... ( -51.20) >DroMoj_CAF1 2278 120 - 1 CUUGGAGAUCUCGCUGGGUCAGUUUCGUGGCGGCGGCGCGCUGCGCGCCUUCGAUCUGGCACCGCUGCUCAAGGGCGUGGCUGCCGGCCAGGUGCUGGCCACAGGCGCCUCCAUCACCUA ..(((((....((((.(((((((..(.((((((.((((((...)))))).))....(((((((((.(((....))))))).))))))))).).)))))))...)))).)))))....... ( -60.50) >DroAna_CAF1 1546 120 - 1 CCUGGAGAUAGCCCUGGGCCAGUUUUCGGGACGCGGCGUGGUCAAGGCCUUCGAUAUGGCGCCGAUUCUCAAGGGAGUGGCGGCGGGCCAGGUCCUGGCCACCGCGGCCUCUAUCACCUA ...((.(((((....(((((.(((.....)))((((..((((((.(((((..(...((.((((.(((((....))))))))).))..).))))).)))))))))))))))))))).)).. ( -54.40) >DroPer_CAF1 1441 120 - 1 UCUGGAGAUAGCCUUGGGCCAGUUCACUGGCCGCGGAGUGGUCAAGGCCUUCGAUAUGGCACCCCUGCUCAAGGGCGUGGCAGUGGGACAGGUGCUGGCCACGGGGGCCUCGAUUACCUA (((((((.....))).((((((....)))))).))))((((((.((((((((....((.(((((((.....)))).))).))((((..(((...))).)))))))))))).))))))... ( -56.50) >consensus UCUGGAGAUAUCCCUGGGCCAGUUUCCUGGCCGCGGCGUGGUCAACGCCUUCGAUAUGGCGCCCCUGCUCAAGGGCGUGGCAGCGGGACAGGUGCUGGCCACAGGCGCCUCCAUCACCUA ..(((((......(((((((((..((....(((((((.(.....).)))........(.(((((((.....)))).))).).))))....))..)))))).)))....)))))....... (-32.27 = -32.00 + -0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:17 2006