Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,244,578 – 14,244,684 |
Length | 106 |
Max. P | 0.628763 |
Location | 14,244,578 – 14,244,684 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 73.86 |
Mean single sequence MFE | -30.36 |
Consensus MFE | -16.97 |
Energy contribution | -17.78 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.33 |
Mean z-score | -1.51 |
Structure conservation index | 0.56 |
SVM decision value | 0.20 |
SVM RNA-class probability | 0.628763 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14244578 106 - 20766785 AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUACCUCCACUUUUAAAUCAUUC ((((.(((((.((..((((((.....))))))((((((((((((.(((...............))).)))))..)))))))..)).)).))))))).......... ( -30.26) >DroVir_CAF1 1372 106 - 1 AGAGCUGGGGCAGCGAUUGCUACGAUGGUGGCUCGGUAAAUGCCACUGGUAAAAUGUCACCCGCGCAGCUGUACUUUGAGUGAGUAAACAUAUCUGGAGGGUAUGU ..((((((((..(((.(((((.....((((((.........)))))))))))..)))..)))...))))).(((((.....))))).(((((((.....))))))) ( -30.70) >DroSec_CAF1 1356 82 - 1 AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAG------------------------UC ...((((.((((.....))))....))))...((((((((((((.(((...............))).)))))..))))))------------------------). ( -23.56) >DroSim_CAF1 1430 106 - 1 AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUAUCUCCACUCUUAAUUCAUUC ((((.(((((.....((((((.....))))))((((((((((((.(((...............))).)))))..)))))))......))))))))).......... ( -32.06) >DroYak_CAF1 1473 106 - 1 AGAGCUGGGGCACCGAUUGCCACGAUGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUACCUCCACUUUUAAUUAAUUC ((((.(((((.((..((((((.....))))))((((((((((((.(((...............))).)))))..)))))))..)).)).))))))).......... ( -30.56) >DroMoj_CAF1 2108 90 - 1 CGAGCUGGGGCAGCGACUGCCACGAUGUGAGCGCGGCGAAUGCCAGUGGCAAAAUGUCACCAGCUCAGCUGUAUUUUGAGUGAGUGAAGA---------------- .(((((((((((.....((((((...((....))(((....))).))))))...)))).)))))))..((.(((((.....))))).)).---------------- ( -35.00) >consensus AGAGCUGGGGCACCGAUUGCCACGACGGCAAUGCUCAAAAUAGCAGUGGAAAAAUGUCACCGGCACAGCUGUACUUUGAGCAAGUAACUCCACUUUUAA_U_AUUC ...(((((((((...((((((.....))))))(((......)))..........)))).)))))...(((........)))......................... (-16.97 = -17.78 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:16 2006