Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,241,613 – 14,241,706 |
Length | 93 |
Max. P | 0.623691 |
Location | 14,241,613 – 14,241,706 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 83.31 |
Mean single sequence MFE | -25.54 |
Consensus MFE | -14.73 |
Energy contribution | -15.37 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.06 |
Mean z-score | -2.13 |
Structure conservation index | 0.58 |
SVM decision value | 0.18 |
SVM RNA-class probability | 0.623691 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14241613 93 + 20766785 ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG----GGUGGCUGUUUGGGUGGUGGUUAUGCCGCACGCAA .(....).......(((.(((..((..((((.(.((((....)))).)...))).)..----))..))).)))..(((((((.....)))).))).. ( -27.50) >DroSec_CAF1 20888 78 + 1 ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG----GGUGGCUGUAUG---------------GCACGCAA .(....).............((((.(((((..((((((..(((..(.....)..))).----.)).))))..))---------------))).)))) ( -21.00) >DroSim_CAF1 26290 78 + 1 ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG----GGUGGCUGUGUG---------------GCACGCAA .(....).............((((.(((((((..((((..(((..(.....)..))).----.)).))..))))---------------))).)))) ( -26.30) >DroEre_CAF1 21644 82 + 1 ACGAACGAAAUGAAGGAAAGUUGUUUGCCGCGUAGCACAGACGUGUGGAAAGUGUGUG----GGUGGUGGUG----------GCAUGCCACACGCA- .(((((((..(......)..)))))))..((((..((((.((.........)).))))----.((((((...----------...)))))))))).- ( -23.10) >DroYak_CAF1 21334 93 + 1 ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUGUGUGGGUGGCGGUGUGGGU---GGUUGUGCCACACGCA- .(....)..................((((((.(.(((((.(((.........))).))))).)))))))((((((((---......))).))))).- ( -29.80) >consensus ACGAAAGAAAUGAAGGAAAGUUGUUUGCCGCGUGGCACAGACGUGUGGAAAGUGUGUG____GGUGGCUGUGUG___________UGCCGCACGCAA .(....)...................(((((....((((.((.........)).)))).....))))).(((((................))))).. (-14.73 = -15.37 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:15 2006