Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,235,591 – 14,235,689 |
Length | 98 |
Max. P | 0.521108 |
Location | 14,235,591 – 14,235,689 |
---|---|
Length | 98 |
Sequences | 5 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 92.14 |
Mean single sequence MFE | -20.34 |
Consensus MFE | -15.34 |
Energy contribution | -15.94 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.14 |
Mean z-score | -1.62 |
Structure conservation index | 0.75 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14235591 98 - 20766785 UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA ..((((((((.....(((((...........(((......)))..........(....)..)))))...((((.....))))))))).)))....... ( -22.80) >DroSec_CAF1 14900 98 - 1 UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA ..((((((((.....(((((...........(((......)))..........(....)..)))))...((((.....))))))))).)))....... ( -22.80) >DroSim_CAF1 19934 98 - 1 UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA ..((((((((.....(((((...........(((......)))..........(....)..)))))...((((.....))))))))).)))....... ( -22.80) >DroEre_CAF1 15367 93 - 1 UCGCUC---UAAUUAGGCAAAACAAAGAGUAGUA-GCAAAGACGAAAAUGAAGCGAAAGGAU-GCCAGCGAAUGCAUAAGUCAGCUGAAGCGAAUGAA (((((.---......((((.........((....-))................(....)..)-)))(((..((......))..)))..)))))..... ( -15.20) >DroYak_CAF1 14986 98 - 1 UCGCUCGGCUAAUUAGGCAAAACAAAGAGUAGUAAGCAAAGAAGAAAAGGCAGCGAAAGGAUUGCAAGUGAAUGCAAAAGUCAGUUGAAGCGUUUGAA .(((((((((......((...((........))..))...........(((..(....)..(((((......)))))..)))))))).))))...... ( -18.10) >consensus UGGCUCAGCUAAUUAGGCAAAACAAAGAGUAGUUAGCAAAGACGAAAAGGAAGCGAAAGGAUUGCCAGCGAUUGCAUAAGUCAGCUGAAGCGUAUGAA ..((((((((.(((.(((((........((.....))................(....)..))))).((....))...))).))))).)))....... (-15.34 = -15.94 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:14 2006