Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,234,589 – 14,234,682 |
Length | 93 |
Max. P | 0.871789 |
Location | 14,234,589 – 14,234,682 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 76.51 |
Mean single sequence MFE | -28.75 |
Consensus MFE | -19.35 |
Energy contribution | -18.93 |
Covariance contribution | -0.42 |
Combinations/Pair | 1.15 |
Mean z-score | -1.53 |
Structure conservation index | 0.67 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.871789 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14234589 93 + 20766785 GC---GCUGCCUUUGCUUGUGUGCUCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GCUG-------GAGCAGAG------ ((---.(((((.(((.((((((((.......((.(((((((((............))))))))).))..))))))))))).)))-...)-------).))....------ ( -30.60) >DroVir_CAF1 14550 91 + 1 -------CGCUUCUAUCUGUGUGCUGCUGAUGUGGGUCAUAAAUGUAACUCCAUUUUUAUGACCAACUUGCACACAACGC--GCAGUCC-------G-UAAGAG--UAAA -------.(((..((((((((((.((.((.(((.(((((((((.((......)).))))))))).....))))))).)))--))))...-------)-))..))--)... ( -26.00) >DroSim_CAF1 18916 100 + 1 GCAAAGCUGCCUUUGCUUGUGUGUGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GCUG-------AAGCAG--AGCAGC .....(((((.(((((((..((((((.....((.(((((((((............))))))))).))..))))))(.((....)-))..-------))))))--)))))) ( -34.90) >DroEre_CAF1 14358 94 + 1 ------CUGCCUUUGCUUGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GAUG-------AAGCAGAG--CAGA ------((((.((((((((((((((......((.(((((((((............))))))))).)).)))))))..((....)-)...-------))))))))--))). ( -32.60) >DroYak_CAF1 13972 83 + 1 -----------------UGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GCUG-------AAGCAGAG--CAGA -----------------.(((((((......((.(((((((((............))))))))).)).))))))).......((-.(((-------...))).)--)... ( -23.20) >DroAna_CAF1 22535 87 + 1 -----------------UGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC-GUUUGGCGUUCGGUCAGAG--C--- -----------------.(((((((......((.(((((((((............))))))))).)).))))))).......((-.((((((.....)))))))--)--- ( -25.20) >consensus _______UGCCUUUGCUUGUGUGCGCCUGAUGUGGGUCAUAAAUGUUACUCCAUUUUUAUGGCCAACUUGCACACGACGAUGGC_GCUG_______AAGCAGAG__CAGA .................(((((((.......((.(((((((((.((......)).))))))))).))..))))))).................................. (-19.35 = -18.93 + -0.42)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:13 2006