| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,228,768 – 14,228,873 |
| Length | 105 |
| Max. P | 0.982058 |
| Location | 14,228,768 – 14,228,873 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.54 |
| Mean single sequence MFE | -24.57 |
| Consensus MFE | -11.89 |
| Energy contribution | -12.86 |
| Covariance contribution | 0.97 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.38 |
| Structure conservation index | 0.48 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.982058 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14228768 105 - 20766785 AAAAAAAAAAAAAAC----GAGACUAGUGGCAAUAUAAACCAGUGGCUUGCUGCCUAUCACUCGACACAGCUGCAAAUGUACAAA-GUGCUACAUUGCAGCGAAAUCCAC ..............(----(((...(.(((.........))).)(((.....))).....)))).....(((((((.((((....-....)))))))))))......... ( -24.10) >DroSec_CAF1 8135 97 - 1 AAAAAC----GAGAG----GAGACUAGUGGCAAUAUAAACCAGUGG----CUGCCUAUCACUCGACACAGCUGCAAAUGUACAAA-GUGCUACAGUGCAGCGAAAUCCAC .....(----(((((----(((.(((.(((.........))).)))----)).)))....)))).....((((((...((((...-)))).....))))))......... ( -26.50) >DroSim_CAF1 13158 97 - 1 AAAAAA----GAGAG----GAGACUAGUGGCAAUAUAAACCAGUGG----CUGCCUAUCACUCGACACAGCUGCAAAUGUACAAA-GUGCUACAUUGCAGCGAAAUCCAC ......----((.((----(((.(((.(((.........))).)))----)).))).))..........(((((((.((((....-....)))))))))))......... ( -25.30) >DroEre_CAF1 8423 93 - 1 AAAAAA----GA--------GCGCUAGUGGCAAUAUAAGCCAGCAA----AUGCCUAUCACUCGACACAGCUGCAAGUGCACAAA-GUGCUACAUUGCAGCGAAAUCCUU ......----((--------(.(.(((((((.......))))((..----..))))).).)))......(((((((((((((...-)))).)).)))))))......... ( -27.60) >DroYak_CAF1 8100 101 - 1 AAAAAA----GAGAGAGAGAGAGCUAGUGGCAAUAUAAACCAGCAA----AUGCCUAUCACUCGACACAGCUGCAAAUGUACAAA-GUGCCACAUUGCAGCGAAAUUCUU ....((----(((((.((.((.((.....((...........))..----..)))).)).)))......(((((((..((((...-))))....))))))).....)))) ( -22.20) >DroAna_CAF1 14015 91 - 1 -CAGCU----GGG-A----GGGACUAGUAGCCACAUUAAGCUCUGA----CUGCCUAUCAGUUGCCACUGCCGCAAUUCUAGUAUUCUUUUUCCUUUU---GGCAUCU-- -..((.----.((-(----((((.(((.(((........)))))).----....(((..((((((.......)))))).)))........))))))).---.))....-- ( -21.70) >consensus AAAAAA____GAGAG____GAGACUAGUGGCAAUAUAAACCAGUGA____CUGCCUAUCACUCGACACAGCUGCAAAUGUACAAA_GUGCUACAUUGCAGCGAAAUCCAC ............................((((...................))))..............(((((((..((((....))))....)))))))......... (-11.89 = -12.86 + 0.97)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:12 2006