Locus 433

Sequence ID 2R_DroMel_CAF1
Location 2,509,369 – 2,509,460
Length 91
Max. P 0.563467
window837

overview

Window 7

Location 2,509,369 – 2,509,460
Length 91
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 65.89
Mean single sequence MFE -15.20
Consensus MFE -9.02
Energy contribution -8.03
Covariance contribution -0.99
Combinations/Pair 1.43
Mean z-score -1.18
Structure conservation index 0.59
SVM decision value 0.06
SVM RNA-class probability 0.563467
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 2509369 91 + 20766785
UUAUGAGAUUUACACCUACAUGUAUAUUCUUCCAAUAUACCAUACUCUGUU-UGCUUUCAGUUUGUGGGAUUCGUUUUCGCCUGUUGCUUGG
....((((..((((......))))...))))((((....(((((..(((..-......)))..)))))...........((.....)))))) ( -14.60)
>DroPse_CAF1 19368 74 + 1
----GAUGGUUAUACAUAU--------------UAAUUGAAAAAUUCUUUUGAUAUUUCAGUUUGUGGGCUUUGUGUUUGCCUGCUGUCUGG
----((((((....((((.--------------.((((((((...((....))..))))))))))))(((.........))).))))))... ( -15.50)
>DroPer_CAF1 20937 74 + 1
----GAUGGUUAUACAUAU--------------UAAUUGAAAAAUUCUUUUGAUAUUUCAGUUUGUGGGCUUUGUGUUUGCCUGCUGUCUGG
----((((((....((((.--------------.((((((((...((....))..))))))))))))(((.........))).))))))... ( -15.50)
>consensus
____GAUGGUUAUACAUAU______________UAAUUGAAAAAUUCUUUUGAUAUUUCAGUUUGUGGGCUUUGUGUUUGCCUGCUGUCUGG
...................................(((((((.....)))))))....(((...(..(((.........)))..)...))). ( -9.02 =  -8.03 +  -0.99)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:28 2006