Locus 4328

Sequence ID 2R_DroMel_CAF1
Location 14,220,238 – 14,220,349
Length 111
Max. P 0.992091
window6939

overview

Window 9

Location 14,220,238 – 14,220,349
Length 111
Sequences 5
Columns 111
Reading direction reverse
Mean pairwise identity 96.31
Mean single sequence MFE -19.62
Consensus MFE -17.22
Energy contribution -17.62
Covariance contribution 0.40
Combinations/Pair 1.07
Mean z-score -2.10
Structure conservation index 0.88
SVM decision value 2.31
SVM RNA-class probability 0.992091
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14220238 111 - 20766785
ACUAAUUGCCACUGCAAACUAACUACAGAUUUAGUAAUCACCUAUAUAUAUUAAAAUUAAGUGUAUCUAUAUCUCAUACAGAUAUAGAUGUACGUAUAGUCAUUGAACUGA
.....((((....))))........(((.((((((......((((((...(((....)))((((((((((((((.....))))))))))))))))))))..))))))))). ( -21.40)
>DroSec_CAF1 37438 110 - 1
ACGAAUUGCCACUGCAAACUAACUACAGAUUUAGUAAUCACCUAUAUAUAUUAACAUUAAGUUUAUCUAUAUCUCAUACAGAUA-AGAUGUACGUAUCGUCAUUGAACUGA
((((.((((....))))......(((.((((....)))).....................((.(((((.(((((.....)))))-))))).)))))))))........... ( -14.90)
>DroSim_CAF1 37184 111 - 1
ACGAAUUGCCACUGCAAACUAACUACAGAUUUAGUAAUCACCUAUAUAUAUUAACAUUAAGUUUAUCUAUAUCUCAUACAGAUAUAGAUGUACGUAUCGUCAUUGAACUGA
((((.((((....))))......(((.((((....)))).....................((.(((((((((((.....))))))))))).)))))))))........... ( -20.20)
>DroEre_CAF1 38792 111 - 1
ACGAAUUGCCACUGCAAACUAACUACAGAUUUAGUAAUCACCUAUAUAUAUUAACAUUAGGGUUAUCUAUAUCUUAUACAGAUAUAGAUGUACGUAUCGUCAUUGAACUGA
.....((((....))))........(((.((((((.....((((.............))))(((((((((((((.....))))))))))).))........))))))))). ( -22.12)
>DroYak_CAF1 39619 111 - 1
ACAAAUUGCCACUGCAAACUAACUACAGAUUUAGUAAUCACCUAUAUAUAUUAACAUUAAGGUUAUCUAUAUCUCAUACAGAUAUAGAUAUACGUAUCGUCAUUGAACUGA
.....((((....))))........(((.((((((....((((................))))(((((((((((.....)))))))))))...........))))))))). ( -19.49)
>consensus
ACGAAUUGCCACUGCAAACUAACUACAGAUUUAGUAAUCACCUAUAUAUAUUAACAUUAAGUUUAUCUAUAUCUCAUACAGAUAUAGAUGUACGUAUCGUCAUUGAACUGA
((((.((((....))))......(((.((((....)))).....................((.(((((((((((.....))))))))))).)))))))))........... (-17.22 = -17.62 +   0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:09 2006