| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,213,373 – 14,213,468 |
| Length | 95 |
| Max. P | 0.529757 |
| Location | 14,213,373 – 14,213,468 |
|---|---|
| Length | 95 |
| Sequences | 5 |
| Columns | 101 |
| Reading direction | forward |
| Mean pairwise identity | 81.91 |
| Mean single sequence MFE | -26.46 |
| Consensus MFE | -10.21 |
| Energy contribution | -11.54 |
| Covariance contribution | 1.33 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.39 |
| SVM decision value | -0.01 |
| SVM RNA-class probability | 0.529757 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14213373 95 + 20766785 GAAUACACAAAAGCAAAUAAACAGUCGGCCACGG------CAACGGCAAUUUCGUCGUCGUCGUCUGCGAACAGAAAGUCGUGAGCAAAGAAUGUUUUUGU ......(((((((((.........((.(((((((------(.(((((......))))).....((((....))))..)))))).))...)).))))))))) ( -26.20) >DroSim_CAF1 30079 95 + 1 GAAUACACAAAAGCAAAUAAACAGUCGGCCACGG------CAACGGCAAUUUCGUCGUCGUCGUCUGCGAACAGAAAGUCGUGAGCAAAGAAUGUUUUUGU ......(((((((((.........((.(((((((------(.(((((......))))).....((((....))))..)))))).))...)).))))))))) ( -26.20) >DroEre_CAF1 31774 100 + 1 GAAUACACAAAAGCAAAUAAACAGUCAGCAACGGCAUUGGCAAUGGCAAUGUCGUCGUCGUCGUCUGCGAAC-GCAAGUCGUGAGCAAAGAAUGUUUUUGU ......(((((((((........(.(.((.(((((((((.(...).))))))))).)).).)((..((((.(-....)))))..))......))))))))) ( -31.10) >DroYak_CAF1 32760 94 + 1 GAAUACACAAAAGCAAAUAAACAGUCGGCAACGG------CAAUGGCAAUGUCGUCGCCGUUGUCUGCGAAC-GAAAGUCGUGAGCAAAGAAUGUUUUUGC .......((((((((...........((((((((------(.(((((...))))).)))))))))(((..((-(.....)))..))).....)))))))). ( -33.70) >DroAna_CAF1 33475 72 + 1 GAAUACACAAAAGCAAAUAAACAGUCAGCAACGG------CGGCGG---------------------CGA-CCGAAAGUCGUGAGCGAAGAAUGUUU-CGU ..................(((((.((.((.((((------(..(((---------------------...-)))...)))))..))...)).)))))-... ( -15.10) >consensus GAAUACACAAAAGCAAAUAAACAGUCGGCAACGG______CAACGGCAAUGUCGUCGUCGUCGUCUGCGAAC_GAAAGUCGUGAGCAAAGAAUGUUUUUGU ......(((((((((..........((....)).........(((((.......((((........)))).......)))))..........))))))))) (-10.21 = -11.54 + 1.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:05 2006