| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,212,663 – 14,212,757 |
| Length | 94 |
| Max. P | 0.584220 |
| Location | 14,212,663 – 14,212,757 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 72.71 |
| Mean single sequence MFE | -26.58 |
| Consensus MFE | -4.08 |
| Energy contribution | -4.12 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.15 |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.584220 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14212663 94 - 20766785 AAAGGCUUGGGGGGGGGGGG-----GGUAGGGC--UGAAAAAAAAGU-AUGGAAAAAACAGAAAUGCCAUUGCCACGUGCCGUUUGACCUUUCCCCAUUGGU ....((((((((..(((.(.-----((((.(((--(........)))-.(((......((....))......)))).)))).)....)))..)))))..))) ( -29.40) >DroSec_CAF1 29931 90 - 1 AAAGGCAAGGAGAGGGUGGU-----GGUGGGUC--GGAA---AAAGU-AUGGAA-AAACAGAAAUGCCAUUGCCACGUGCCGUUUGACCUUUCCCCAUUGGU ...((...(((((((((((.-----.((((.((--.(..---.....-.).)).-...((....))))))..))))....(....).)))))))))...... ( -24.60) >DroSim_CAF1 29379 91 - 1 AAAGGCAGGCAGGGGGUGGA-----GGUGGGUU--GGAA--AAAAGU-AUGGAA-AAACAGAAAUGCCAUUGCCACGUGCCGUUUGACCUUUCCCCAUUGGU ((((((((((.(.(.((((.-----.((((.((--....--))....-......-...((....))))))..)))).).).))))).))))).......... ( -24.50) >DroYak_CAF1 32071 79 - 1 AAAUC---------------------GAGGAGGAAGGAAAAAACAGU-AUGGAA-AAACAGAAAUGCCAUUGCCACGUGCCGUUUGACCUUUCCCUUUUGGU .....---------------------((((.((((((...((((.((-((((..-...((....))......)))..))).))))..))))))))))..... ( -19.60) >DroAna_CAF1 32872 92 - 1 ---GGCUGUCAGUGGGUGGGUGGUUGGUUGGUU--GGAG--GCGGGUGGUGUAG-UAACCAAAAUGCCAUUGCCACGUGCCGUUUGACCUUUCC--AUUGGU ---.....((((((((.((((.(.((((((((.--...(--(((..((((....-..))))...))))...))))...))))..).)))).)))--))))). ( -34.80) >consensus AAAGGCAGGCAGGGGGUGGG_____GGUGGGUC__GGAA__AAAAGU_AUGGAA_AAACAGAAAUGCCAUUGCCACGUGCCGUUUGACCUUUCCCCAUUGGU ..................................................((((.......(((((.(((......))).))))).....))))........ ( -4.08 = -4.12 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:04 2006