Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,198,725 – 14,198,831 |
Length | 106 |
Max. P | 0.554343 |
Location | 14,198,725 – 14,198,831 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 80.85 |
Mean single sequence MFE | -30.22 |
Consensus MFE | -20.32 |
Energy contribution | -22.64 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.33 |
Mean z-score | -1.60 |
Structure conservation index | 0.67 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.554343 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14198725 106 - 20766785 CUGAAAUAUCAAUGGAUCUAGGGCAGAGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUCUUGGAUCCCAUUUUGUCGGUCUGACGCUGAAUCCGGAAAGGAG .............(((((((((((...((((.((((.(.......).)))).))))....))))))))))).......(((((.....))))).(((.....))). ( -31.20) >DroSec_CAF1 15983 106 - 1 AUGAAAUAUCCAUGGAUCUACGCCAAGGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUUUCGGUUCCCAUUUUGUCGGUAUAACACUGAUUCCGGAAAGGAG ........(((..(((((...(((...((((.((((.(.......).)))).))))...)))...)))))((.....((((((.....))))))...))...))). ( -24.60) >DroSim_CAF1 16384 106 - 1 AUGAAAUAUCCAUGGAUCUAGGGCAAGGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUUUCGGAUCCCAUUUUGUCGGUAUAACACUGAUUCCGGAAAGGAG ........(((..((((((..(((...((((.((((.(.......).)))).))))....)))..))))))......((((((.....))))))...)))...... ( -29.00) >DroEre_CAF1 16307 94 - 1 AUGAAAUACCCAGGGAUCUG------------GAGCUCAAGGAAAGCGCAUCCUUCGCAGGCUUCGGAUCCCAUUUUGUCGGUCUAACCCUUCAUUCGGAGCGGAG ............((((((((------------(((((.(((((.......)))))....)))))))))))))...............((((((....)))).)).. ( -31.90) >DroYak_CAF1 17390 106 - 1 AUGAAAUAUCCAAGGAUCCAAAACAAGGAACAAAGCUCAAGGAAAGUGCUUCGUUCGCAGGUUUUGGAUCCCAUUUCGUGGGUAUAACGCUUCAUUCGGAGAGGAG .....(((((((.(((((((((((..(((((.((((.(.......).)))).)))).)..))))))))))).......)))))))..(.((((....)))).)... ( -34.40) >consensus AUGAAAUAUCCAUGGAUCUAGGGCAAGGAACUAAGCUCAAGAAAAGUGCUUCGUUCACAGGUUUCGGAUCCCAUUUUGUCGGUAUAACACUGAAUCCGGAAAGGAG ........(((..(((((((((((...((((.((((.(.......).)))).))))....)))))))))))..((((((((((.....)))))...))))).))). (-20.32 = -22.64 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:00 2006