Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,195,230 – 14,195,330 |
Length | 100 |
Max. P | 0.717882 |
Location | 14,195,230 – 14,195,330 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 69.44 |
Mean single sequence MFE | -29.87 |
Consensus MFE | -15.02 |
Energy contribution | -14.88 |
Covariance contribution | -0.14 |
Combinations/Pair | 1.39 |
Mean z-score | -1.58 |
Structure conservation index | 0.50 |
SVM decision value | 0.39 |
SVM RNA-class probability | 0.717882 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14195230 100 + 20766785 GUUUAUGGCAGCUGUUAGCUGAUCGAUCAGCGAAUGAUUGUUGCAAUCCUGAAGCACAAUUAUGUUGAACGGUUGUUCUCCCUGACGCUGUUGACCGUUU ....((((((((.....)))).((((.(((((.((((((((.((.........))))))))))...((((....)))).......))))))))))))).. ( -27.20) >DroVir_CAF1 20101 81 + 1 CGCUAAGGCAGUCGUCAGCUGAUCAAUCAGUGCACUAUUUUCGCAAUCCUGCAGCACAACAAUGCUGAACGGUGGCGGCUC------------------- .((....))(((((((((((((....)))))................((..(((((......)))))...)))))))))).------------------- ( -23.50) >DroPse_CAF1 21862 81 + 1 GCUUAUGGCCGUGGUUAGCUGAUCGAUGAGCGCAUUAUUGUCGCAGUCCUGCAGCACAAUGAUGUUCAGGGGCUGGCCCCC------------------- ((((((.(...(((....)))..).))))))((((((((((((((....))).).))))))))))...((((....)))).------------------- ( -28.30) >DroSim_CAF1 12612 100 + 1 GUUUAUAGCAGCUGUUAGCUGAUCGAUCAGCGAAUGAUUGUUGCAAUCCUGAAGCACAAUUAUGUUGAAGGGUUGUUCUCCCUGAUGCUGUUGACCGUUU .....(((((((.(((((..((.((((((.....))))))..((((((((..((((......))))..))))))))))...))))))))))))....... ( -29.50) >DroYak_CAF1 13803 100 + 1 ACUUAUGGCAGCAGUUAGCUGGUCGAUCAGCGAGUGAUUGUUGCAAUCCUGCAGCACAAUUAUGUUGAAGGGCUGAUCGCCCGGUUGCUGCUGACUGUUU ....(((((((((((.((((((.((((((((.......(((((((....)))))))((((...))))....)))))))).))))))))))))).)))).. ( -44.30) >DroPer_CAF1 20397 81 + 1 GCUGAUGGCCGUGGUUAGCUGAUCGAUGAGCGCAUUAUUGUCGCAGUCCUGCAGCACAAUGAUGUUCAGGGGCUGGCCCCC------------------- (((.((.(...(((....)))..).)).)))((((((((((((((....))).).))))))))))...((((....)))).------------------- ( -26.40) >consensus GCUUAUGGCAGCGGUUAGCUGAUCGAUCAGCGAAUGAUUGUCGCAAUCCUGCAGCACAAUUAUGUUGAAGGGCUGGUCCCC___________________ ......(((((..((..(((((....)))))..))..))))).(((((((..((((......))))..)))))))......................... (-15.02 = -14.88 + -0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:59 2006