Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,181,493 – 14,181,592 |
Length | 99 |
Max. P | 0.999850 |
Location | 14,181,493 – 14,181,592 |
---|---|
Length | 99 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 68.81 |
Mean single sequence MFE | -35.23 |
Consensus MFE | -17.73 |
Energy contribution | -18.52 |
Covariance contribution | 0.78 |
Combinations/Pair | 1.18 |
Mean z-score | -3.30 |
Structure conservation index | 0.50 |
SVM decision value | 4.25 |
SVM RNA-class probability | 0.999850 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14181493 99 - 20766785 CAUCCGUGUGUGGGCGAGUGAGUGCGAUGACAUAUAC--------------AUAUGUAUAGUAUAGUAUAUAUAUACAGAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .....(((..((((((..(((((((..(((..(((((--------------....)))))(((((.......)))))....)))..))))).))..))))))..)))...... ( -36.20) >DroYak_CAF1 26359 107 - 1 CAUCCGUGUGUGGGCGAGUGAGAGCGAAG-----UACAUAACAAUAUGUAUACAUGUAU-GUAUAUAAAGUAUAUACAGAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .....(((..((((((..((.(((((..(-----((((((....)))))))...(((((-((((.....))))))))).........)))))))..))))))..)))...... ( -41.80) >DroAna_CAF1 26816 91 - 1 CAUCCGUGAGUGGGUGAACAAGCGGGACGGC-----UAGAUC------------GG--UGGCA---UAUAUAUACAAAAAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .......(((((((((.....(((((.(((.-----..((.(------------(.--(....---...................).)).))...)))))))).))))))))) ( -27.70) >consensus CAUCCGUGUGUGGGCGAGUGAGAGCGAAG_C___UACA_A_C_________A_AUGUAU_GUAUA_UAUAUAUAUACAGAUUCAAAGCGCUCCAUCCGCCCGUGCAUCCGCUC .....(((..((((((.((((((((.............................................................))))).))).))))))..)))...... (-17.73 = -18.52 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:53 2006