Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,180,198 – 14,180,318 |
Length | 120 |
Max. P | 0.908056 |
Location | 14,180,198 – 14,180,318 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.00 |
Mean single sequence MFE | -37.98 |
Consensus MFE | -24.28 |
Energy contribution | -27.08 |
Covariance contribution | 2.80 |
Combinations/Pair | 1.07 |
Mean z-score | -2.13 |
Structure conservation index | 0.64 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.908056 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14180198 120 - 20766785 UCGACUCUUCGUCCUUUGGACUAUAAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUACUAAAACAAAUGCACCCCAGCCAAAUACUUACGGAUGAAGAC .....(((((((((((((.....))))....(((.(((.....)))(((.(((((((((((....))))))))))))))..................)))..........))))))))). ( -37.30) >DroSec_CAF1 24385 120 - 1 UCGACUCUUCGUCCUUUGGACUACCAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUCCUUAAACAAAUGCACCACAGCCAGAUACUUACGGAUUCUGAG ....(((...(((((((((....)))))...(((.(((.....)))...((((((((((((....))))))))))))....................)))..........))))...))) ( -34.70) >DroSim_CAF1 24549 120 - 1 UCGACUCUUCGUCCUUUGGACUACCAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUCCUGAUACAAAUGCACCGCAGCCAGAUACUUACGGAUUCUGAG ....(((...(((((((((....)))))...(((.(((.(..(((.(((((((((((((((....)))))))))))).....)))...))).)))).)))..........))))...))) ( -37.10) >DroEre_CAF1 25308 120 - 1 GAGACUCUGCGUCCUUUGGACUACGAGAAGAGGCAGCGGGAGGCCCGUAAGAUUCUACUCAAAUCGCAGGAGAAUCUGCUCCAGCACAUGAACGCCAGCCAGAUGCCCAUGGAUGCAGAC .....(((((((((..(((.....(((.((((...(((((...)))))....)))).))).....(((((((......)))).((........))........)))))).))))))))). ( -40.60) >DroYak_CAF1 24946 108 - 1 UCAACUCUGCGUCCUGUGGACUACGAGAGAAGGCAGCGGGAGGCGCGUGAGAUACUAAUCAAGUCGCAGGAGAAUCUGCUCCAGCACUUGGAC------------CCCAUGGAUGCAGAU .....(((((((((.((...((.(....).))...))(((((...(....)...))..((((((.((.((((......)))).))))))))..------------)))..))))))))). ( -40.20) >consensus UCGACUCUUCGUCCUUUGGACUACCAGAAAAGGCAGCGAGAGGCGCGUAAGAUUCUUCUGAAAUCUCAGGAGAAUCUCCUCAAACAAAUGCACCCCAGCCAGAUACUUACGGAUGCAGAC .....(((((((((...((.(.....)....(((.(((.....)))...(((((((((((......)))))))))))....................))).....))...))))))))). (-24.28 = -27.08 + 2.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:52 2006