Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,178,871 – 14,178,977 |
Length | 106 |
Max. P | 0.942242 |
Location | 14,178,871 – 14,178,977 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 116 |
Reading direction | reverse |
Mean pairwise identity | 82.66 |
Mean single sequence MFE | -26.76 |
Consensus MFE | -21.12 |
Energy contribution | -21.92 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.17 |
Structure conservation index | 0.79 |
SVM decision value | 1.32 |
SVM RNA-class probability | 0.942242 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14178871 106 - 20766785 ---AAAAAAAAAACAAAAAAAUGAAAAUACCCGCGUGGUGGAAAGUCUCGAGAUAUUU--CAGAGCUUCAGGCGGUCCACAGCGGGAAAGUCAAUUUUAUUAA-----AAAAUGGA ---.............((((.(((.....(((((...(((((..((((.(((......--.....))).))))..))))).)))))....))).)))).....-----........ ( -28.10) >DroSec_CAF1 23069 104 - 1 ---AAAUAAAAAGCAUU-CGAUUACGAUAGCCGCGUGGUGGAAAGUCUAGAGAUAUUU--CAGAGCUUCAGGCGGUCCACAGCGGGAAAGUCAAUUUC-CUAA-----AAAAUGGA ---.........((..(-((....)))..))(((...(((((..((((..((......--.....))..))))..))))).)))(((((.....))))-)...-----........ ( -27.00) >DroSim_CAF1 23226 107 - 1 AAAAAAUAAAAAGCAUU-CGAUUACGAUAGCCGCGUGGUGGAAAGUCUAGAGAUAUUU--CAGAGCUUCAGGCGGUCCACAGCGGGAAAGUCAAUUUC-CUAA-----AAAAUGGA ............((..(-((....)))..))(((...(((((..((((..((......--.....))..))))..))))).)))(((((.....))))-)...-----........ ( -27.00) >DroEre_CAF1 23965 98 - 1 --------AAAGGCAUU-GAAUUACGAUACCCGCUUUGUGGAAAGUCUCGAGAUAUUU--GAGAGCUUCAGGAGGUCCCCAGCGGGAAAGGCAGUUUC-AUAA------AAAUGGA --------....(((((-(.....)))).((((((.....(((..(((((((...)))--))))..))).((......))))))))....))...(((-((..------..))))) ( -22.40) >DroYak_CAF1 23533 111 - 1 --AAAAU-AAAAGCAUU-GAAUUACGAUACCCGCGUGGUGGAAAGUCUUGAGAUAUUUUCUAGAGCUUCAGGCGGUCCACAGCGGGAAAGUCAAAUGG-AUAAAGUUUAAAAUGGA --.....-.......((-(((((......(((((...(((((..((((.(((...((.....)).))).))))..))))).)))))...(((.....)-))..)))))))...... ( -29.30) >consensus ___AAAUAAAAAGCAUU_CAAUUACGAUACCCGCGUGGUGGAAAGUCUAGAGAUAUUU__CAGAGCUUCAGGCGGUCCACAGCGGGAAAGUCAAUUUC_AUAA_____AAAAUGGA .............................(((((...(((((..((((.(((...((.....)).))).))))..))))).))))).............................. (-21.12 = -21.92 + 0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:51 2006