Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,178,331 – 14,178,427 |
Length | 96 |
Max. P | 0.607359 |
Location | 14,178,331 – 14,178,427 |
---|---|
Length | 96 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 74.76 |
Mean single sequence MFE | -21.29 |
Consensus MFE | -13.92 |
Energy contribution | -14.32 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.16 |
Mean z-score | -1.42 |
Structure conservation index | 0.65 |
SVM decision value | 0.15 |
SVM RNA-class probability | 0.607359 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14178331 96 + 20766785 UUUGCCCCUC---------CACCAAAGUAA-CCGAAUUCCCCUGGGUC-----CACCA--------CUUCACACUUGACUUACA-GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG ...((((((.---------.....((((..-..(....)...(((...-----..)))--------......)))).......)-)))))...(((((((((....)))))))))..... ( -23.32) >DroSec_CAF1 22540 93 + 1 UUUGCCCCGU---------CUUGAG---AA-CCGAAUCCCCCUGGGUC-----CACCU--------CUUCACACUUGACUUGCA-GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG ...(((((((---------(.((.(---((-......(((...)))..-----.....--------.))).))...))).....-)))))...(((((((((....)))))))))..... ( -23.74) >DroSim_CAF1 22701 93 + 1 UUUGCCCCGU---------CUUGAG---AA-CCGAAUCCCCCUGGGUC-----CACCU--------CUUCACACUUGACUUACA-GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG ...(((((..---------..((((---..-..(.((((....)))).-----)....--------..(((....)))))))..-)))))...(((((((((....)))))))))..... ( -24.20) >DroEre_CAF1 23439 107 + 1 UGUGCCCCUCCAGCACCAACUUGGG---AA-CCGAAUC-CCCUGGGUCCUCUGCACCU--------CUUCACACUUGACUUACUUGGGGCCACAAAGUUCGUUCCCAUGAACUUCUUCUG ((((((((....(((...(((..((---..-.......-.))..)))....)))....--------..(((....))).......)))).))))((((((((....))))))))...... ( -27.20) >DroAna_CAF1 24212 102 + 1 AUAGCCUGCC---------CUUCUG---ACUUCUUCUCCACCUUUCUC-----CUUCUCUCUCUAGCUUCACACUUGACUUGGC-UGAGCCGCAAAGUUCGUUCCCAUGAUCUUCUUCUG ......(((.---------.....(---(.....))............-----.......(((.(((((((....)))...)))-))))..)))(((.((((....)))).)))...... ( -8.00) >consensus UUUGCCCCGC_________CUUGAG___AA_CCGAAUCCCCCUGGGUC_____CACCU________CUUCACACUUGACUUACA_GGGGCCACGAAGUUCGUUCCCAUGAACUUCUUCUG ...(((((..............................((....))......................(((....))).......)))))...(((((((((....)))))))))..... (-13.92 = -14.32 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:49 2006