Locus 4310

Sequence ID 2R_DroMel_CAF1
Location 14,176,942 – 14,177,048
Length 106
Max. P 0.516021
window6916

overview

Window 6

Location 14,176,942 – 14,177,048
Length 106
Sequences 6
Columns 115
Reading direction reverse
Mean pairwise identity 83.18
Mean single sequence MFE -32.72
Consensus MFE -21.88
Energy contribution -21.98
Covariance contribution 0.10
Combinations/Pair 1.16
Mean z-score -1.76
Structure conservation index 0.67
SVM decision value -0.03
SVM RNA-class probability 0.516021
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14176942 106 - 20766785
UGCGCGCCACUCUUGCAUUCCUUUCGAUGGCUCUGGGUGCGCAGAA----CUC--UC-CCCCCAGCCGUCCCUC--CCAUCCGGGCAUUUGUGGAAUUUUAAUUGCGCAAAACAA
((((((((((...(((.........(((((((..(((.(.(.((..----..)--).-))))))))))))....--((....)))))...)))).........))))))...... ( -32.30)
>DroSec_CAF1 21087 108 - 1
UGCGCGCCACUCUUGCAUUCCUUUCGAUGGCUCUGGGUGCGCAGAA----CUCCCUC-CCCCCAGCAGUCCCUC--CCAUCCGGGCAUUUGUGGAAUUUUAAUUGCGCAAAACAA
((((((((((...(((.........((.(((((((((.(.(.((..----....)).-))))))).)).)).))--((....)))))...)))).........))))))...... ( -30.30)
>DroSim_CAF1 21266 108 - 1
UGCGCGCCACUCUUGCAUUCCUUUCGAUGGCUCUGGGUGCGCAGAA----CUCCCUC-CCCCCAGCAGUCCCUC--CCAUCCGGGCAUUUGUGGAAUUUUAAUUGCGCAAAACAA
((((((((((...(((.........((.(((((((((.(.(.((..----....)).-))))))).)).)).))--((....)))))...)))).........))))))...... ( -30.30)
>DroEre_CAF1 21996 106 - 1
UGCGCGCCACUCUUGCAUUCCUUUCGAUGGCUCUGGGUGCGCAGAA----GCCCCUC-C-AAGUGCC-CCCCUC--CCAUCGGGGCAUUUGUGGAAUUUUAAUUGCGCAAAAAAU
((((((((((((..((..((.....))..))...))))).)).(((----(..((..-(-(((((((-((....--.....)))))))))).))..))))....)))))...... ( -38.10)
>DroYak_CAF1 21643 109 - 1
UGCGCGCCACUCUUGCAUUCCUUUCGAUGGCUCUGGGUGCGCAGAA----GCCUCCCUC-UCUUACC-CCCCUUCUCCUUUGGGGCAUUUGUGGAAUUUUAAUUGCGCAAAAAAC
((((((((((...(((.........((.(((((((......))).)----)))))....-.......-.(((.........))))))...)))).........))))))...... ( -29.80)
>DroAna_CAF1 22287 108 - 1
UGCGCGCCACUCUUGCAUUCCUGGAG-CAGCUCUGGGUGCU--GGAGCCACUCGCUC-CUCUCU-CUCCCCCUC--UUGGCGAGGCAUUUGUGGAAUUUUAAUUGCGCAAAAAAC
((((((((((...(((......((((-(.((((..(...).--.)))).....))))-).....-(((((....--..)).))))))...)))).........))))))...... ( -35.50)
>consensus
UGCGCGCCACUCUUGCAUUCCUUUCGAUGGCUCUGGGUGCGCAGAA____CUCCCUC_CCCCCAGCCGCCCCUC__CCAUCCGGGCAUUUGUGGAAUUUUAAUUGCGCAAAAAAA
((((((((((...(((...((....(((((....(((...((......................))...)))....))))).)))))...)))).........))))))...... (-21.88 = -21.98 +   0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:46 2006