| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 14,173,066 – 14,173,161 |
| Length | 95 |
| Max. P | 0.533732 |
| Location | 14,173,066 – 14,173,161 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 83.07 |
| Mean single sequence MFE | -26.15 |
| Consensus MFE | -19.99 |
| Energy contribution | -20.35 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.35 |
| Mean z-score | -1.44 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.533732 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14173066 95 - 20766785 GUGCGUCAAACAGCUGUUUGGUAUCUUUUUGGCUGCGGUAUUUCAGGUGGGCUUUU--AAGCUUACCUGCAAACGGUCUUACUUAUUGCAAAAAUAA .((((.......(((((((((((.((....)).))).......((((((((((...--.)))))))))))))))))).........))))....... ( -27.09) >DroSec_CAF1 17199 95 - 1 GUGCGUCAAACAGCUGUUUGGUAUCUUUUCGGCUGCGGUAUUUCAGGUGGGCUUUU--AAGCUUACCUGUAUACGGUCUUACUUAGUGCAAAAAUAA (..(......((((((...((...))...))))))(.((((..((((((((((...--.)))))))))).)))).).........)..)........ ( -29.30) >DroSim_CAF1 17366 95 - 1 GUGCGUCAAACAGCUGUUUGGUAUCUUUUCGGCUGCGGUAUUUCAGGUGGGCUUUU--AAGCUUACCUGCAUACGGUCUUACUUAGUGCAAAAAUAA (..(......((((((...((...))...))))))(.((((..((((((((((...--.)))))))))).)))).).........)..)........ ( -28.30) >DroEre_CAF1 18154 95 - 1 GUGCAGUGAACAGCUGUUCGGUAUCUUUUCGCCUGCGGUAUUUCAGGUGUGCUUAU--GAGCUUACCAGUAUACGGUCUCACUUAGUGCAAAAAUAA (..((((((...(((((.(((((......((((((........)))))).(((...--.))).)))).)...))))).)))))..)..)........ ( -23.90) >DroYak_CAF1 17677 95 - 1 GUGCAGUGAACAGCUGUUCGGUAUCUUUUCGCCUGCGGUAUUUCAGGUGGGCUUUU--GCGCUUACCUGCAUACGGUCUUACUGUGUGCAAAAAUAA ......((((..(((((..(((........))).)))))..))))(((((((....--..)))))))(((((((((.....)))))))))....... ( -31.60) >DroAna_CAF1 18126 95 - 1 GUGCCGACAACAGCUGUUUAGUAUUUUUAC--UUUUGGUAUUUUUGCAGGGAUUUUUCAGAGUUGCUAGUAUACGGCCACACUUAGUGCAGAAAUAA ((((((......((((...((((....)))--)..)))).....(((((.(((((....))))).)).)))..))).)))................. ( -16.70) >consensus GUGCGGCAAACAGCUGUUUGGUAUCUUUUCGGCUGCGGUAUUUCAGGUGGGCUUUU__AAGCUUACCUGCAUACGGUCUUACUUAGUGCAAAAAUAA .((((.(((((....)))))..............((.((((..(((((((((((....))))))))))).)))).)).........))))....... (-19.99 = -20.35 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:45 2006