Locus 4308

Sequence ID 2R_DroMel_CAF1
Location 14,168,613 – 14,168,703
Length 90
Max. P 0.745017
window6914

overview

Window 4

Location 14,168,613 – 14,168,703
Length 90
Sequences 4
Columns 96
Reading direction forward
Mean pairwise identity 76.91
Mean single sequence MFE -14.37
Consensus MFE -11.56
Energy contribution -11.62
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.44
Structure conservation index 0.80
SVM decision value 0.46
SVM RNA-class probability 0.745017
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14168613 90 + 20766785
AACCUUUUCCACACCU-CCACC--UCCCCCCUCCCU--A-CAAUGACCACUUCAUGCCGAAGUUGGCUCAAAAGCCAUUACGCACCGCUGUGAGAU
.......((((((.(.-.....--............--.-...((((((((((.....)))).))).)))...((......))...).)))).)). ( -13.80)
>DroSim_CAF1 12620 94 + 1
AACCUUUUCUACACAU-CCCCCCCUCCCCCCUCCUCAAC-CGCUGACCACUUCAUGCCGAAGUUGGCUCAAAAGCCAUUACGCACUGCUGUGAGAU
................-................((((..-.((.(...(((((.....)))))(((((....))))).......).))..)))).. ( -15.30)
>DroEre_CAF1 13723 79 + 1
AACCUUUUCCACACCUCCAACCC-----------------AAAUGGCCACUUCAAGCCGAAGUUGGCUCAAAAGCCAUUACGCACCGCUGUGAGAU
.......((((((.(........-----------------...((((((((((.....)))).)))).))...((......))...).)))).)). ( -15.90)
>DroYak_CAF1 13203 92 + 1
AACCUUUUCCACACCAUCCACCCCC--CACCCCCCU--UCGUAAACCCAAUUCAAGAGGAAGUUGGCUCAAAAGCCAUUACGCACCGCUGUGAGAU
.......((((((.(..........--.......((--((...............))))....(((((....))))).........).)))).)). ( -12.46)
>consensus
AACCUUUUCCACACCU_CCACCC_U__CCCCUCCCU____CAAUGACCACUUCAAGCCGAAGUUGGCUCAAAAGCCAUUACGCACCGCUGUGAGAU
.......((((((...................................(((((.....)))))(((((....)))))...........)))).)). (-11.56 = -11.62 +   0.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:44 2006