Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,164,998 – 14,165,093 |
Length | 95 |
Max. P | 0.668873 |
Location | 14,164,998 – 14,165,093 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 106 |
Reading direction | reverse |
Mean pairwise identity | 79.88 |
Mean single sequence MFE | -22.08 |
Consensus MFE | -13.13 |
Energy contribution | -14.22 |
Covariance contribution | 1.08 |
Combinations/Pair | 1.12 |
Mean z-score | -1.79 |
Structure conservation index | 0.59 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668873 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14164998 95 - 20766785 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCUGAGGAUGUCCUUACAGG-GACUA------GAA---AACGGCAAUGAAAU ....-..(((...((.((((((...((.(((((....))))))).)))))).))((((.....(((((....))-)))..------...---..)))).))).... ( -22.20) >DroSec_CAF1 9322 95 - 1 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGA-GACUA------GAA---AACGGCAAUGAAAU .(((-(((((..((((((((((...((.(((((....))))))).)))))...)))))...)))))))).....-.....------...---.............. ( -23.60) >DroSim_CAF1 9098 95 - 1 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGG-GACUA------GAA---AACGGCAAUGAAAU .(((-(((((..((((((((((...((.(((((....))))))).)))))...)))))...)))))))).....-.....------...---.............. ( -23.60) >DroEre_CAF1 9917 83 - 1 AAAG-GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGG-GACUA------GAA---AA------------ .(((-(((((..((((((((((...((.(((((....))))))).)))))...)))))...)))))))).....-.....------...---..------------ ( -23.60) >DroYak_CAF1 9399 90 - 1 AAAGGGACAUAAUUGCUGCCAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUUCUUACAGG-AAAUGAAAUCUGAA---AU------------ ..((((((((..((((((.....((((.(((((....)))))..))))....))))))...)))))))).((((-........))))..---..------------ ( -20.70) >DroPer_CAF1 11285 93 - 1 AAAG-GACAUAAUUGCUGCCAUAGAUUCUCGGGAGGAGUUGAAAGGUUGCAGCCACAGAAAAGACCUUCGCAGAGGACUU------GAGCCACAGGGGAA------ ....-.......((((.(((...(((((.(....))))))....))).))))((..........((((....)))).(((------(.....))))))..------ ( -18.80) >consensus AAAG_GACAUAAUUGCUGCAAUAGAUUCUCGACAGAAGUUGAAAGGUUGCAUCAGCAGAGGAUGUCCUUACAGG_GACUA______GAA___AACGGCAA______ .(((.(((((..((((((((((...((.(((((....))))))).))))))...))))...))))))))..................................... (-13.13 = -14.22 + 1.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:43 2006