Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,157,437 – 14,157,532 |
Length | 95 |
Max. P | 0.899484 |
Location | 14,157,437 – 14,157,532 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 105 |
Reading direction | forward |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -35.92 |
Consensus MFE | -25.70 |
Energy contribution | -26.12 |
Covariance contribution | 0.42 |
Combinations/Pair | 1.16 |
Mean z-score | -2.35 |
Structure conservation index | 0.72 |
SVM decision value | 1.01 |
SVM RNA-class probability | 0.899484 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14157437 95 + 20766785 CUGUAGACGGGAUGCUGCAGGAACAGGCUGUUGGUGUCCAUGGGGCAGUCAUCCUGCAGCACACCAUUCAGCACGAGCACCAUC----CUGGC------UGUCUG ...(((((((..((((((((((...(((((((((...)))....)))))).))))))))))..))....(((..((......))----...))------)))))) ( -38.20) >DroVir_CAF1 3206 95 + 1 CUAUAGACAGGAUGCUGCAGGAACAGGCUGUUUGUAUCCAUCGGGCAGUCAUCCUGCAGCACACCGUUCAGCACAAGCACCAUC----CUGGU------CGUUUC .....(((((((((((((((((...(((((((((.......))))))))).)))))))))..........((....))...)))----)).))------)..... ( -38.70) >DroPse_CAF1 1869 93 + 1 CGGUAGACGGGAUGCUGCAGGAACAGGCUGUUGGUGUCCAUCGGGCAAUCAUCCUGCAGCACGCCAUUCAGCACUAGGACCAUC----CUGGC------U--CCG (((.((.(((((((((((((((...(.(((.(((...))).))).).....)))))))))..((......)).........)))----))).)------)--))) ( -36.10) >DroWil_CAF1 1235 90 + 1 CUAUACACGGGAUGCUGUAGAAACAAACUGUUGGUGUCCAUGGGGCAGUCAUCCUGCAGAACACCAUUCAAUACGAGCACCAUU----CUCCC------U----- ........(((((((((((..(((.....)))(((((.(.....((((.....)))).).)))))......))).)))).....----.))))------.----- ( -20.80) >DroMoj_CAF1 3076 105 + 1 CUGUAGACGGGAUGCUGCAGGAACAGGCUGUUCGUGUCCAUGGGGCAGUCAUCCUGCAGCACACCAUUCAGCACUAGCACCAUUGCUCUUGCUAUCCAACGUCUC ....((((((..((((((((((...((((((((.........)))))))).))))))))))..))....((((..((((....))))..)))).......)))). ( -44.90) >DroAna_CAF1 3699 94 + 1 CUGUAGACGGGAUGCUGCAGGAACAGGCUGUUGGUGUCCAUGGGACAGUCGUCCUGCAGCACUCCAUUCAAAACGAGCACCAUU----GUGGC------UGGCU- ........((..((((((((((...(((((((((...)))....)))))).))))))))))..))..........(((.((...----..)).------..)))- ( -36.80) >consensus CUGUAGACGGGAUGCUGCAGGAACAGGCUGUUGGUGUCCAUGGGGCAGUCAUCCUGCAGCACACCAUUCAGCACGAGCACCAUC____CUGGC______UGUCU_ ........((..((((((((((...(((((((...........))))))).))))))))))..))........................................ (-25.70 = -26.12 + 0.42)
Location | 14,157,437 – 14,157,532 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 81.11 |
Mean single sequence MFE | -33.51 |
Consensus MFE | -23.01 |
Energy contribution | -22.93 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.27 |
Mean z-score | -1.37 |
Structure conservation index | 0.69 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.571147 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14157437 95 - 20766785 CAGACA------GCCAG----GAUGGUGCUCGUGCUGAAUGGUGUGCUGCAGGAUGACUGCCCCAUGGACACCAACAGCCUGUUCCUGCAGCAUCCCGUCUACAG .((((.------..(((----.(((.....))).)))...((..((((((((((.(.(((.....(((...))).))).)...))))))))))..)))))).... ( -34.90) >DroVir_CAF1 3206 95 - 1 GAAACG------ACCAG----GAUGGUGCUUGUGCUGAACGGUGUGCUGCAGGAUGACUGCCCGAUGGAUACAAACAGCCUGUUCCUGCAGCAUCCUGUCUAUAG .....(------((.((----((((.(((..(.((((....((((.(.((((.....)))).....).))))...)))).....)..))).)))))))))..... ( -30.80) >DroPse_CAF1 1869 93 - 1 CGG--A------GCCAG----GAUGGUCCUAGUGCUGAAUGGCGUGCUGCAGGAUGAUUGCCCGAUGGACACCAACAGCCUGUUCCUGCAGCAUCCCGUCUACCG (((--(------(((((----(.....))).).)))..((((.(((((((((((.....((..(.(((...))).).))....))))))))))).))))...))) ( -35.20) >DroWil_CAF1 1235 90 - 1 -----A------GGGAG----AAUGGUGCUCGUAUUGAAUGGUGUUCUGCAGGAUGACUGCCCCAUGGACACCAACAGUUUGUUUCUACAGCAUCCCGUGUAUAG -----.------((((.----..((.....((.((((..((((((((.((((.....)))).....)))))))).)))).))......))...))))........ ( -26.90) >DroMoj_CAF1 3076 105 - 1 GAGACGUUGGAUAGCAAGAGCAAUGGUGCUAGUGCUGAAUGGUGUGCUGCAGGAUGACUGCCCCAUGGACACGAACAGCCUGUUCCUGCAGCAUCCCGUCUACAG .((((......(((((..((((....))))..)))))...((..((((((((((.(.(((...............))).)...))))))))))..)))))).... ( -40.16) >DroAna_CAF1 3699 94 - 1 -AGCCA------GCCAC----AAUGGUGCUCGUUUUGAAUGGAGUGCUGCAGGACGACUGUCCCAUGGACACCAACAGCCUGUUCCUGCAGCAUCCCGUCUACAG -(((..------(((..----...)))))).((...((.(((..((((((((((((.((((....(((...)))))))..)).))))))))))..))))).)).. ( -33.10) >consensus _AGACA______GCCAG____AAUGGUGCUCGUGCUGAAUGGUGUGCUGCAGGAUGACUGCCCCAUGGACACCAACAGCCUGUUCCUGCAGCAUCCCGUCUACAG ............((((.......))))...........((((..((((((((((.(.(((...............))).)...))))))))))..))))...... (-23.01 = -22.93 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:42 2006