Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,154,580 – 14,154,673 |
Length | 93 |
Max. P | 0.994908 |
Location | 14,154,580 – 14,154,673 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -32.34 |
Consensus MFE | -32.20 |
Energy contribution | -32.20 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.50 |
Structure conservation index | 1.00 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971442 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14154580 93 + 20766785 ------ACAAAAUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUAAAUACUAGAUG ------.........((((((((((((.......)))))((((((.((...)).)))).)).................))))))).............. ( -32.20) >DroSec_CAF1 7917 99 + 1 UGUAUAAAAAAAUUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUAAACGCAACUUG ...............((((((((((((.......)))))((((((.((...)).)))).)).................))))))).............. ( -32.20) >DroSim_CAF1 6918 99 + 1 UGUAUAAAAAAAGUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUAAACGCAACUUG ..........(((((((((((((((((.......)))))((((((.((...)).)))).)).................)))))(......)))))))). ( -32.90) >DroEre_CAF1 7119 99 + 1 UGAAAAAAAGAGGUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUAAAUGCAAGUUG ...............((((((((((((.......)))))((((((.((...)).)))).)).................))))))).............. ( -32.20) >DroYak_CAF1 7132 99 + 1 AUAAAAAAAGCGGUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUAAACAUAUCUUG ...............((((((((((((.......)))))((((((.((...)).)))).)).................))))))).............. ( -32.20) >consensus UGAAAAAAAAAAGUUGCAUCGGCCGGGAAUCGAACCCGGGCCGCCCGCGUGGCAGGCGAGCAUUCUACCACUGAACCACCGAUGCUUAAACGCAACUUG ...............((((((((((((.......)))))((((((.((...)).)))).)).................))))))).............. (-32.20 = -32.20 + -0.00)
Location | 14,154,580 – 14,154,673 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 90.10 |
Mean single sequence MFE | -36.82 |
Consensus MFE | -35.90 |
Energy contribution | -35.90 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.98 |
SVM decision value | 2.52 |
SVM RNA-class probability | 0.994908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14154580 93 - 20766785 CAUCUAGUAUUUAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAAUUUUGU------ ..............(((((((..((((.......))))((.(((((((...)))))))))(((((.......)))))))))))).........------ ( -35.90) >DroSec_CAF1 7917 99 - 1 CAAGUUGCGUUUAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAAAUUUUUUUAUACA ..............(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............... ( -35.90) >DroSim_CAF1 6918 99 - 1 CAAGUUGCGUUUAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACUUUUUUUAUACA .((((((((((...((.((((((((...(((((.....)).)))..))))).)))))((((.(((.......))))))))))))))))).......... ( -39.30) >DroEre_CAF1 7119 99 - 1 CAACUUGCAUUUAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACCUCUUUUUUUCA ..............(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............... ( -35.90) >DroYak_CAF1 7132 99 - 1 CAAGAUAUGUUUAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACCGCUUUUUUUAU ......((((....)))).(((((((..(((((((.........)))))))(((..(((((.(((.......)))))))).))))))))))........ ( -37.10) >consensus CAAGUUGCGUUUAAGCAUCGGUGGUUCAGUGGUAGAAUGCUCGCCUGCCACGCGGGCGGCCCGGGUUCGAUUCCCGGCCGAUGCAACUUUUUUUAUACA ..............(((((((..((((.......))))((.(((((((...)))))))))(((((.......))))))))))))............... (-35.90 = -35.90 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:40 2006