Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,126,401 – 14,126,521 |
Length | 120 |
Max. P | 0.982776 |
Location | 14,126,401 – 14,126,521 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 94.99 |
Mean single sequence MFE | -22.70 |
Consensus MFE | -21.66 |
Energy contribution | -21.34 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.17 |
Mean z-score | -1.54 |
Structure conservation index | 0.95 |
SVM decision value | 1.92 |
SVM RNA-class probability | 0.982776 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14126401 120 + 20766785 CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAUAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU ...............(((((...(((((((((..((((.........))))((((....))))........))))....(((((.......)))))....)))))))))).......... ( -23.80) >DroSec_CAF1 26575 120 + 1 CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU ...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......)))))....)))))))))).......... ( -25.20) >DroSim_CAF1 39814 120 + 1 CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAGAUACGGCUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU ...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......)))))....)))))))))).......... ( -24.00) >DroEre_CAF1 22009 118 + 1 CGUUACUUCUAAUUGCGGCAAAUAGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCCAAUAUAAUUUUGGAU--UUUUUCUUCCGAUAUUUUUCU ...............(((.....(((((((((..((((.((...)).))))((((....))))........))))....(((((.......))))).--..))))).))).......... ( -20.50) >DroYak_CAF1 38030 118 + 1 CGUUACUUCUAAUUGCGGAAAAUAGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAU--UUUUUCUUCCGAUAUUUUUCU ...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......))))))--))))..))))).......... ( -20.00) >consensus CGUUACUUCUAAUUGCGGCAAAUGGAAAACACUCUCGUCUCACAGAUACGACUGCACUUGCAGAUACACUUGUGUAUUUUCAGAUAUAAUUUUUGAUAUUUUUCCUGCCGAUAUUUUUAU ...............(((((...(((((((((..((((.((...)).))))((((....))))........))))....(((((.......)))))....)))))))))).......... (-21.66 = -21.34 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:27 2006