Locus 4296

Sequence ID 2R_DroMel_CAF1
Location 14,124,361 – 14,124,462
Length 101
Max. P 0.614541
window6894

overview

Window 4

Location 14,124,361 – 14,124,462
Length 101
Sequences 3
Columns 101
Reading direction forward
Mean pairwise identity 86.62
Mean single sequence MFE -21.93
Consensus MFE -15.66
Energy contribution -16.67
Covariance contribution 1.01
Combinations/Pair 1.13
Mean z-score -2.15
Structure conservation index 0.71
SVM decision value 0.16
SVM RNA-class probability 0.614541
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 14124361 101 + 20766785
UUCGGGCAGUUUUUUGAAGGUACUUAACUAAAUUAGUUAUUCUCUCUCUCUCUCUUCACACAUUUGGUUUGGAAUUGUGUUGGCCAAAAGAUUGCUUAAAU
((..((((((((((((..((....((((((...))))))....))..........(((((((.((.......)).)))).))).))))))))))))..)). ( -19.70)
>DroSec_CAF1 24487 97 + 1
UUUGAGCAGCUUUUUGAAGUUAUUUAACUAAAUUACUUAUACUCUCUCUAUCU----ACACAUUUUGUGUGGAAUUGUGUUGACCCAAAGAUUGCCUAAAU
((((.((((.((((((((((.((((....)))).))))............(((----((((.....)))))))............)))))))))).)))). ( -18.70)
>DroSim_CAF1 37712 97 + 1
UUCAGGCAUUUUUUGGAAGUUACUUAACUAAAUUAGUUAUACUCUCUCUAUCU----ACACAUUUUGUGUGGAAUUGUGUUGGCCCAAAGAUUGCCUAAAU
...(((((.(((((((.(((....((((((...)))))).))).......(((----((((.....)))))))...........))))))).))))).... ( -27.40)
>consensus
UUCGGGCAGUUUUUUGAAGUUACUUAACUAAAUUAGUUAUACUCUCUCUAUCU____ACACAUUUUGUGUGGAAUUGUGUUGGCCCAAAGAUUGCCUAAAU
...(((((((((((((.(((....((((((...)))))).)))..............(((((.(((.....))).)))))....))))))))))))).... (-15.66 = -16.67 +   1.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:25 2006