Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,122,088 – 14,122,182 |
Length | 94 |
Max. P | 0.780482 |
Location | 14,122,088 – 14,122,182 |
---|---|
Length | 94 |
Sequences | 4 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 88.77 |
Mean single sequence MFE | -22.55 |
Consensus MFE | -19.38 |
Energy contribution | -19.62 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.65 |
Structure conservation index | 0.86 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.780482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14122088 94 + 20766785 GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAGACAAAAUAAAAAAAAAAAAAGCGUGUUAACA .((((((((((((((((((((....))...))).)).)))))))..(......)))).)))................................. ( -22.90) >DroSec_CAF1 22268 90 + 1 GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAAACAAAAUAAAAAAA----AAACUUGAUAACA .((((((((((((((((((((....))...))).)).)))))))..(......)))).)))................----............. ( -22.90) >DroSim_CAF1 35480 90 + 1 GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAAAGCAAAUAAAAAAA----AAACUUGAUAACA .((((((((((((((((((((....))...))).)).)))))))..(......)))).)))................----............. ( -22.90) >DroEre_CAF1 17431 83 + 1 GGGGCUCGUGAGGGAGCACGGGGGACUGCAGUGACUACUUUCACUAGGAAC---GAGACCCAAACCGA----AAAAA----AAGCUCGAUAACA .((((((((.........(((....))).(((((......)))))....))---))).)))....(((----.....----....)))...... ( -21.50) >consensus GGGGCUCGUGAGGGAGCACGGGUGACUGCAGUGACUACUUUCACUAGGAACGACGAGACCCAAACAAAAUAAAAAAA____AAACUUGAUAACA .((((((((((((((((((..(......).))).)).)))))))..(......)))).)))................................. (-19.38 = -19.62 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:25 2006