Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 14,104,767 – 14,104,864 |
Length | 97 |
Max. P | 0.575269 |
Location | 14,104,767 – 14,104,864 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 91.52 |
Mean single sequence MFE | -38.82 |
Consensus MFE | -29.48 |
Energy contribution | -29.36 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.08 |
Mean z-score | -1.61 |
Structure conservation index | 0.76 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.575269 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 14104767 97 + 20766785 GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCAGGGA--------GACAUGGUGAAGGCCAGGAUGAGGGGCGACGCCCACCUGGGCUGCCGUUUAAU .(((((....((((((---(((.......))))))))).)))))(..--------..)(((((..((.(((((.....((((...)))).))))).)))))))..... ( -38.40) >DroSec_CAF1 13973 97 + 1 GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCAGGGA--------GACAUGGUGAAGGCCAGGAUGCGGGGCGACGCCCACCUGGGCUGCCGUUUAAU .(((((....((((((---(((.......))))))))).)))))(..--------..)(((((..((.(((((.....((((...)))).))))).)))))))..... ( -38.40) >DroSim_CAF1 27266 97 + 1 GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCAGGGA--------GACAUGGUGAAGGCCAGGAUGCGGGGCGACGCCCACCUGGGCUGCCGUUUAAU .(((((....((((((---(((.......))))))))).)))))(..--------..)(((((..((.(((((.....((((...)))).))))).)))))))..... ( -38.40) >DroEre_CAF1 9098 105 + 1 GUUGCCAUUGUUGUCU---GUUGAUGAGGAGCAGGCAGGGGCCAGGGGACAUGGGGACAUGGUGAAGGCCAGGAUGAGGGGCAACGCCCACCUGGGCUGCCGUUUAAU ((((((.(..((((((---(((.......)))))))...((((......((((....)))).....))))..))..)..))))))((((....))))........... ( -42.50) >DroYak_CAF1 24930 100 + 1 GUUGCCAUUGUUGUCUGCCGUUGAUGAGGAGCAGGCGGUGGCAAGGG--------GACGUGGUGAAGGACAGGAUGAGGGGCGACGCCCACCUGGGCUGCCGUUUAAU .(..((((.(((.(((((((..(.((.....))..)..)))).))).--------)))))))..).........((((.((((..((((....)))))))).)))).. ( -36.40) >consensus GUUGCCAUUGUUGUCU___GUUGAUGAGGAGCAGGCAGGGGCAGGGA________GACAUGGUGAAGGCCAGGAUGAGGGGCGACGCCCACCUGGGCUGCCGUUUAAU .(((((.((.(..((.......))..).))...)))))....................(((((..((.(((((.....((((...)))).))))).)))))))..... (-29.48 = -29.36 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:16:23 2006