Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 2,497,802 – 2,497,905 |
Length | 103 |
Max. P | 0.841310 |
Location | 2,497,802 – 2,497,905 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 86.12 |
Mean single sequence MFE | -26.46 |
Consensus MFE | -17.86 |
Energy contribution | -19.06 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.44 |
Structure conservation index | 0.67 |
SVM decision value | 0.75 |
SVM RNA-class probability | 0.841310 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 2497802 103 + 20766785 ----CUUAAGAUUUGCCACCACAAUCGGA-AAGUAGCUAUUUUCUAGCUAGCUUUGCCCAUUAA----UCGAUUGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA ----.....(((.((((.....(((.(((-(((((((((.....))))).))))).)).)))..----..(((..(((....)))..))))))).))).............. ( -32.40) >DroSec_CAF1 9386 107 + 1 ----CCUAAGAUUUGCCACCACAAUUGGA-AAGUAGCUUUUUUCUAGCUAGCUUAGCCCAUUAUUCAUUCGAUAGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA ----.....(((.((((........(((.-((((((((.......)))).))))...)))..........(((.((((....)))).))))))).))).............. ( -26.30) >DroSim_CAF1 9375 107 + 1 ----CCUAGGAUUUGCCACCACAAUCGGA-AAGUAGCUUUUUUCUAGCUAGCUCAGCCCAUUAUUCAUUCGAUAGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA ----....((((.(((((((...((((((-...(((((.......)))))((...))..........)))))).((((....))))))).)))).))))............. ( -30.20) >DroEre_CAF1 9579 108 + 1 ACAAUAUACAAUUUGCCACCGCAAUCUGAAAAGUAGCUAUUUUCUAGCUAGCGUGGCCCAAUAA----UCGAUAGUUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA .............(((((((((...((....))((((((.....))))))))(((..(((((..----......)))))...))).))).)))).................. ( -25.30) >DroYak_CAF1 9409 104 + 1 ----UUUACAAUUUGGCACCACAACCUGAACAGUAGCUAUUUUGUAGCUAGCUUGGCCCAAUAA----UCGAUAGGUGACAACACUGGUCGGCACAUCCCACUCACUCAACA ----........((((..(((....((....))(((((((...)))))))...))).))))...----(((((.((((....)))).))))).................... ( -18.10) >consensus ____CCUAAGAUUUGCCACCACAAUCGGA_AAGUAGCUAUUUUCUAGCUAGCUUAGCCCAUUAA____UCGAUAGGUGGCAACACUGGUCGGCACAUCCCACUCACUCAACA .........(((.((((................((((((.....))))))....................(((.((((....)))).))))))).))).............. (-17.86 = -19.06 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:38:24 2006